| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028433
Identifier: 238028433
GI number: 238028433
Start: 3284243
End: 3285535
Strand: Reverse
Name: 238028433
Synonym: bglu_1g28970
Alternate gene names: NA
Gene position: 3285535-3284243 (Counterclockwise)
Preceding gene: 238028434
Following gene: 238028428
Centisome position: 84.1
GC content: 73.16
Gene sequence:
>1293_bases ATGAGCCTGGCGCGCTCGTTCCGTTCGCTACGTCATTCGAACTACCGGCTGTGGGCGGCCGGCGCGCTCGTCTCGAACGT CGGCACCTGGGTGCAGCGCACCGCGCAGAGCTGGCTCGTGCTCACGCAACTGACGCGTCACGACGCCTCGGCGGTCGGCA TCGTGATGGCGCTGCAATATGCGCCGCAGATGCTGCTGCTGCCGTGGACCGGCTACGCGGCCGACCATTTCGACCAGCGC AAGCTGCTGCGCGCGACCCAGGCGCTGATGGGCGCGCTCGCGTTCGGGCTCGGTGTGATCGTGGTGGCGGGCGTGGCGCG GCTCTGGCATGTATACCTGTTCGCGCTGCTGTTCGGCAGCGTGGCCGCGTTCGATGCGCCGGTGCGGCAGACCTTCGTCA CCTCGCTCGTCGGCGACGCGGATCTCGCCAACGCGGTCGCGCTCAACTCCACCGTGTTCAACGCGGCGCGCATGATCGGC CCCGCCGTGGCGGGACTCCTGATCTCGTCGGTCGGCACCGGCTGGGCGTTCGTCGCGAACGGCCTGTCGTTCGGCGCGGT GCTGGTGTCGCTGTCGCGGCTGCGCGTCTCGCCGCAGCACCCGGGGGCGCAGTCGCGGCGCGCGCGGGGCGGCCTCGCGG CGGGCGCGCGCTACGTGCGCGGCCGGCCCGACCTGCTTGCGATCCTCGCGATGCTGTTCCTGATCGGCACCTTTGGGCTC AATTTCCAGATCTACCTCTCGACGATGGCCGTCGACGTGTTCCACACCGGCGCGAGCGGTTTCGGGCTGCTGTCGTCGAT CATGGCGATCGGCACCATCGCGGGCGCGCTGGTGGCCGCCGGCCGCGACCGTCCCACGCTGCGCACGCTGCTCGGCGGTT GCGCGGCGTTCGGCATCGGCTGCGCCTGCGCGGCGCTGGCGCCGGGCTTCTGGAGCTTCGGCGCGATGCTGGTGGTGGTC GGCGTCGCCGCGCTGACCATCACCAATTCCTCGAACAGCCTGATGCAGCTGTCCACCGAGCCGGGCATGCGCGGGCGTGT GACGGCGTTGCGCGTGGCGATCGTGATGGGCGGCACGCCGCTCGGCGCACCGATCGCCGGCTGGGTGGCGGACCGCTTCG GGCCGCGCTGGTCGCTCGGCGTGGGCGCGGCGGCCGGCGCCGCAGCCGCCGTGGTGGCGCTGCGCGCGATGCGGCGGCAG GCGCGCGAGGCGCGGGCCGCGGCCGAGGGAAGTGACGAGGCCGTCGCGCGCGAGGCGGACCAGAGGGCATCGCGCGCGGT GCGGCGCCGCTGA
Upstream 100 bases:
>100_bases CCGGTCCGGCCCGGGCCGTCGTTCCCGCGCGGGCCGCCGGGTCGGATGTGCCGGCCCGCGCCTGCCGGCCCGAGGGCCGC TGGTGCAGCGGGGCGCGGCA
Downstream 100 bases:
>100_bases ACGCGGCACGCCGGGAGCGTGCCGCGCAATGAAAAAGCCCGCCCGGAGCGGCCTCCGGGCGGGCTGGCTGGCAGGCGCGC CGCGTCGCGACGAGGCGCGC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Transmembrane Efflux Protein; Facilitator Superfamily Permease; Arabinose Efflux Permease Family Protein; Facilitator Superfamily Transporter; Multidrug ABC Transporter; Macrolide-Efflux Protein; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Transporter Facilitator Family Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Transporter Facilitator Family; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; Transporter-Like Membrane Protein; MFS Permease; MFS Family Membrane Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Membrane Efflux Protein MFS; Transmembrane Transporter; MFS Family Transporter; Transport Transmembrane Protein; MFS Superfamily Transporter; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MSLARSFRSLRHSNYRLWAAGALVSNVGTWVQRTAQSWLVLTQLTRHDASAVGIVMALQYAPQMLLLPWTGYAADHFDQR KLLRATQALMGALAFGLGVIVVAGVARLWHVYLFALLFGSVAAFDAPVRQTFVTSLVGDADLANAVALNSTVFNAARMIG PAVAGLLISSVGTGWAFVANGLSFGAVLVSLSRLRVSPQHPGAQSRRARGGLAAGARYVRGRPDLLAILAMLFLIGTFGL NFQIYLSTMAVDVFHTGASGFGLLSSIMAIGTIAGALVAAGRDRPTLRTLLGGCAAFGIGCACAALAPGFWSFGAMLVVV GVAALTITNSSNSLMQLSTEPGMRGRVTALRVAIVMGGTPLGAPIAGWVADRFGPRWSLGVGAAAGAAAAVVALRAMRRQ AREARAAAEGSDEAVAREADQRASRAVRRR
Sequences:
>Translated_430_residues MSLARSFRSLRHSNYRLWAAGALVSNVGTWVQRTAQSWLVLTQLTRHDASAVGIVMALQYAPQMLLLPWTGYAADHFDQR KLLRATQALMGALAFGLGVIVVAGVARLWHVYLFALLFGSVAAFDAPVRQTFVTSLVGDADLANAVALNSTVFNAARMIG PAVAGLLISSVGTGWAFVANGLSFGAVLVSLSRLRVSPQHPGAQSRRARGGLAAGARYVRGRPDLLAILAMLFLIGTFGL NFQIYLSTMAVDVFHTGASGFGLLSSIMAIGTIAGALVAAGRDRPTLRTLLGGCAAFGIGCACAALAPGFWSFGAMLVVV GVAALTITNSSNSLMQLSTEPGMRGRVTALRVAIVMGGTPLGAPIAGWVADRFGPRWSLGVGAAAGAAAAVVALRAMRRQ AREARAAAEGSDEAVAREADQRASRAVRRR >Mature_429_residues SLARSFRSLRHSNYRLWAAGALVSNVGTWVQRTAQSWLVLTQLTRHDASAVGIVMALQYAPQMLLLPWTGYAADHFDQRK LLRATQALMGALAFGLGVIVVAGVARLWHVYLFALLFGSVAAFDAPVRQTFVTSLVGDADLANAVALNSTVFNAARMIGP AVAGLLISSVGTGWAFVANGLSFGAVLVSLSRLRVSPQHPGAQSRRARGGLAAGARYVRGRPDLLAILAMLFLIGTFGLN FQIYLSTMAVDVFHTGASGFGLLSSIMAIGTIAGALVAAGRDRPTLRTLLGGCAAFGIGCACAALAPGFWSFGAMLVVVG VAALTITNSSNSLMQLSTEPGMRGRVTALRVAIVMGGTPLGAPIAGWVADRFGPRWSLGVGAAAGAAAAVVALRAMRRQA REARAAAEGSDEAVAREADQRASRAVRRR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44860; Mature: 44729
Theoretical pI: Translated: 12.12; Mature: 12.12
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLARSFRSLRHSNYRLWAAGALVSNVGTWVQRTAQSWLVLTQLTRHDASAVGIVMALQY CCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH APQMLLLPWTGYAADHFDQRKLLRATQALMGALAFGLGVIVVAGVARLWHVYLFALLFGS CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAFDAPVRQTFVTSLVGDADLANAVALNSTVFNAARMIGPAVAGLLISSVGTGWAFVAN HHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC GLSFGAVLVSLSRLRVSPQHPGAQSRRARGGLAAGARYVRGRPDLLAILAMLFLIGTFGL CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC NFQIYLSTMAVDVFHTGASGFGLLSSIMAIGTIAGALVAAGRDRPTLRTLLGGCAAFGIG CCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH CACAALAPGFWSFGAMLVVVGVAALTITNSSNSLMQLSTEPGMRGRVTALRVAIVMGGTP HHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHEEHHCCCCC LGAPIAGWVADRFGPRWSLGVGAAAGAAAAVVALRAMRRQAREARAAAEGSDEAVAREAD CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QRASRAVRRR HHHHHHHHCC >Mature Secondary Structure SLARSFRSLRHSNYRLWAAGALVSNVGTWVQRTAQSWLVLTQLTRHDASAVGIVMALQY CHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH APQMLLLPWTGYAADHFDQRKLLRATQALMGALAFGLGVIVVAGVARLWHVYLFALLFGS CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAAFDAPVRQTFVTSLVGDADLANAVALNSTVFNAARMIGPAVAGLLISSVGTGWAFVAN HHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC GLSFGAVLVSLSRLRVSPQHPGAQSRRARGGLAAGARYVRGRPDLLAILAMLFLIGTFGL CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC NFQIYLSTMAVDVFHTGASGFGLLSSIMAIGTIAGALVAAGRDRPTLRTLLGGCAAFGIG CCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH CACAALAPGFWSFGAMLVVVGVAALTITNSSNSLMQLSTEPGMRGRVTALRVAIVMGGTP HHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHEEHHCCCCC LGAPIAGWVADRFGPRWSLGVGAAAGAAAAVVALRAMRRQAREARAAAEGSDEAVAREAD CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH QRASRAVRRR HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA