| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is coaBC [H]
Identifier: 238028415
GI number: 238028415
Start: 3262743
End: 3263954
Strand: Direct
Name: coaBC [H]
Synonym: bglu_1g28790
Alternate gene names: 238028415
Gene position: 3262743-3263954 (Clockwise)
Preceding gene: 238028414
Following gene: 238028416
Centisome position: 83.52
GC content: 69.8
Gene sequence:
>1212_bases TTGGAACACCAGGAACTGGCAGGAAAACATCTCGTGATCGGCATGACGGGCGGCATCGCCTGCTACAAGATCGCCGAACT CACGCGCCTGCTGACCAAGGCCGGCGCGACCGTGCAGGTGGTGATGACCGAGGCCGCCACGCAGTTCATCACGCCGGTCA CGATGCAGGCGCTGTCGGGGCGGCCCGTGTTCACGAGCCAGTGGGACGCGCGCGTCGACAACAACATGGCGCACATCGAC CTGTCGCGCCACGCCGACGCGATCGTGATCGCGCCGGCCTCGACCGACTTCCTCGCGAAGCTCGCGCACGGCTTCGCCGA CGATCTGCTCGCGACGCTGTGCATCGCGCGCGACTGCCCGCTGCTGGTGGTGCCGGCCATGAACCGCCAGATGTGGCAGA ACCCGGCCACGCAGCGCAACGCAGCGCAGTTGCGCGCCGACGGCGTGGCCGTGCTCGGCCCCGATTCGGGCGCGCAGGCC TGCGGCGAAGTCGGCGACGGGCGCATGCTCGAGCCGGGCGCCATCTACGAGGCAATCGTCTCGCATTTCCGGCCGAAGCG GCTCGCCCACAAGCGCGTGCTGATCACGGCCGGCCCGACCTTCGAACCGCTCGATCCGGTGCGCGGGCTCACCAACCGCT CCAGCGGCAAGATGGGCTTCGCGCTCGCACGCGCCGCGCAGCAGGCCGGTGCCGAGGTTCACCTGGTGGCGGGCCCGGTG CCGCTCGCCACGCCGTGGGGCGTCTACCGCGAGGACGTGCAGACCGCGCAGCAGATGCACGACGCCGTGATGCATGCGGT GCCCGACGCGGATCTGTTCATCGCGGTGGCGGCCGTGGCCGACTGGCGCGTCGACCAGCCCGCCGAGCACAAGATCAAGA AGACCGCCGATCGCCGGATGCCGGTGCTGAACTTCGTCGAGAATCCCGACATCCTGGCCGCGGTCGCGGCACTGCCCGAC GCGCCCTACTGCGTCGGCTTCGCGGCCGAAAGCGGCGACCTCGACGTACACGGCGAGGAAAAGCGCCTGCGCAAAGGGGT GCCCCTGTTGATCGGCAACCTCGGCCCGCTGACGTTCGGCCTCGACGACAATGAGGTCGTGCTGTTCGAAGCCGGCGGCA CGACGCGGCTGCCGCGCGCGCCGAAGGCCACGCTCGCGCACACGCTGATCGACGAAATCGCGAAGCGTCTGCCCGACACG CGCCTGATCTGA
Upstream 100 bases:
>100_bases TGCGCGGCACGCGCTGAGCCTCACCGTCGCGCCCGAGCGGCGCGGCGCGTGACAGGGCCGGGCCGCGTGGCGCCGGCCCG TTTCGTTACCGGAGGTCCAG
Downstream 100 bases:
>100_bases TCCATCCAAGCCGCCGGGCCGCAACGCATGGCGCGGCCCGGTGCATGTTGCAATTTCACGACTCCTGCCAGCAGACCCGC CGCATGAAACTCGACCTCAA
Product: bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
Products: NA
Alternate protein names: DNA/pantothenate metabolism flavoprotein; Phosphopantothenoylcysteine decarboxylase; PPCDC; CoaC; Phosphopantothenate--cysteine ligase; CoaB; PPC synthetase; PPCS; Phosphopantothenoylcysteine synthase [H]
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MEHQELAGKHLVIGMTGGIACYKIAELTRLLTKAGATVQVVMTEAATQFITPVTMQALSGRPVFTSQWDARVDNNMAHID LSRHADAIVIAPASTDFLAKLAHGFADDLLATLCIARDCPLLVVPAMNRQMWQNPATQRNAAQLRADGVAVLGPDSGAQA CGEVGDGRMLEPGAIYEAIVSHFRPKRLAHKRVLITAGPTFEPLDPVRGLTNRSSGKMGFALARAAQQAGAEVHLVAGPV PLATPWGVYREDVQTAQQMHDAVMHAVPDADLFIAVAAVADWRVDQPAEHKIKKTADRRMPVLNFVENPDILAAVAALPD APYCVGFAAESGDLDVHGEEKRLRKGVPLLIGNLGPLTFGLDDNEVVLFEAGGTTRLPRAPKATLAHTLIDEIAKRLPDT RLI
Sequences:
>Translated_403_residues MEHQELAGKHLVIGMTGGIACYKIAELTRLLTKAGATVQVVMTEAATQFITPVTMQALSGRPVFTSQWDARVDNNMAHID LSRHADAIVIAPASTDFLAKLAHGFADDLLATLCIARDCPLLVVPAMNRQMWQNPATQRNAAQLRADGVAVLGPDSGAQA CGEVGDGRMLEPGAIYEAIVSHFRPKRLAHKRVLITAGPTFEPLDPVRGLTNRSSGKMGFALARAAQQAGAEVHLVAGPV PLATPWGVYREDVQTAQQMHDAVMHAVPDADLFIAVAAVADWRVDQPAEHKIKKTADRRMPVLNFVENPDILAAVAALPD APYCVGFAAESGDLDVHGEEKRLRKGVPLLIGNLGPLTFGLDDNEVVLFEAGGTTRLPRAPKATLAHTLIDEIAKRLPDT RLI >Mature_403_residues MEHQELAGKHLVIGMTGGIACYKIAELTRLLTKAGATVQVVMTEAATQFITPVTMQALSGRPVFTSQWDARVDNNMAHID LSRHADAIVIAPASTDFLAKLAHGFADDLLATLCIARDCPLLVVPAMNRQMWQNPATQRNAAQLRADGVAVLGPDSGAQA CGEVGDGRMLEPGAIYEAIVSHFRPKRLAHKRVLITAGPTFEPLDPVRGLTNRSSGKMGFALARAAQQAGAEVHLVAGPV PLATPWGVYREDVQTAQQMHDAVMHAVPDADLFIAVAAVADWRVDQPAEHKIKKTADRRMPVLNFVENPDILAAVAALPD APYCVGFAAESGDLDVHGEEKRLRKGVPLLIGNLGPLTFGLDDNEVVLFEAGGTTRLPRAPKATLAHTLIDEIAKRLPDT RLI
Specific function: Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine [H]
COG id: COG0452
COG function: function code H; Phosphopantothenoylcysteine synthetase/decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PPC synthetase family [H]
Homologues:
Organism=Homo sapiens, GI71725351, Length=177, Percent_Identity=36.1581920903955, Blast_Score=96, Evalue=7e-20, Organism=Escherichia coli, GI87082301, Length=398, Percent_Identity=48.4924623115578, Blast_Score=333, Evalue=1e-92, Organism=Caenorhabditis elegans, GI17560194, Length=195, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6322762, Length=189, Percent_Identity=31.2169312169312, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24657262, Length=190, Percent_Identity=33.1578947368421, Blast_Score=96, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005252 - InterPro: IPR007085 - InterPro: IPR003382 [H]
Pfam domain/function: PF04127 DFP; PF02441 Flavoprotein [H]
EC number: =4.1.1.36; =6.3.2.5 [H]
Molecular weight: Translated: 43206; Mature: 43206
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHQELAGKHLVIGMTGGIACYKIAELTRLLTKAGATVQVVMTEAATQFITPVTMQALSG CCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCC RPVFTSQWDARVDNNMAHIDLSRHADAIVIAPASTDFLAKLAHGFADDLLATLCIARDCP CCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC LLVVPAMNRQMWQNPATQRNAAQLRADGVAVLGPDSGAQACGEVGDGRMLEPGAIYEAIV EEEEECCCHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHCCCCCEECCHHHHHHHH SHFRPKRLAHKRVLITAGPTFEPLDPVRGLTNRSSGKMGFALARAAQQAGAEVHLVAGPV HHCCHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC PLATPWGVYREDVQTAQQMHDAVMHAVPDADLFIAVAAVADWRVDQPAEHKIKKTADRRM CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC PVLNFVENPDILAAVAALPDAPYCVGFAAESGDLDVHGEEKRLRKGVPLLIGNLGPLTFG CHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEECCCCEEEC LDDNEVVLFEAGGTTRLPRAPKATLAHTLIDEIAKRLPDTRLI CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEHQELAGKHLVIGMTGGIACYKIAELTRLLTKAGATVQVVMTEAATQFITPVTMQALSG CCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCC RPVFTSQWDARVDNNMAHIDLSRHADAIVIAPASTDFLAKLAHGFADDLLATLCIARDCP CCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC LLVVPAMNRQMWQNPATQRNAAQLRADGVAVLGPDSGAQACGEVGDGRMLEPGAIYEAIV EEEEECCCHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHCCCCCEECCHHHHHHHH SHFRPKRLAHKRVLITAGPTFEPLDPVRGLTNRSSGKMGFALARAAQQAGAEVHLVAGPV HHCCHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC PLATPWGVYREDVQTAQQMHDAVMHAVPDADLFIAVAAVADWRVDQPAEHKIKKTADRRM CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC PVLNFVENPDILAAVAALPDAPYCVGFAAESGDLDVHGEEKRLRKGVPLLIGNLGPLTFG CHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEECCCCEEEC LDDNEVVLFEAGGTTRLPRAPKATLAHTLIDEIAKRLPDTRLI CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]