| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is traC [H]
Identifier: 238028381
GI number: 238028381
Start: 3224271
End: 3227147
Strand: Reverse
Name: traC [H]
Synonym: bglu_1g28420
Alternate gene names: 238028381
Gene position: 3227147-3224271 (Counterclockwise)
Preceding gene: 238028382
Following gene: 238028378
Centisome position: 82.61
GC content: 67.61
Gene sequence:
>2877_bases ATGAGTAACGCACCCATGTCGGAATTCGAGCGGGCGAGAGTCGCGCTCGGCTATGTTCTGCCCGACGACCGCGACACGTG GCGTCAGGTGGGGATGGCGCTCAAGGCCGAGTTCGGCGAGGAGGGCTTTGCCCTCTGGAACGAATGGAGCCAAGGCGCGC AGAACTACAACGGCAAGGACGCGCGGGATGTGTGGAAGTCGTTCAAGGGCGGCAAGATCACCATCAACACGCTGTTTCAT CTCGCCAAGGTCGGCGGCTTCGATCCGCGCGCGCATCGGGCGAAACCGGTCGATCCAGCGGAGCGCGAGCGGCAGAAAGC CGAGCGCGCGGCCCGCGAAGCGGCCGAGCTGGCCGAACTGACCGAGAAGCAGCAAGCCGCGTCGGCGCTCGCGGAATCGA TCTGGTCGGCGGCCGACCCTGCGCCGGCCGATCACCCGTATCTCGTTCGCAAGCGCATCCCGGTCGACGCGCTGCGCGTC TATCGCGGCGGCTTGTGCATCGGCACGGCCGCGTGCGACGGCGCCCTCGTCATCCCGGCCCGTGACGCGGACGGCAAGCT GTGGACGCTGGAGTTCGTCCTCACGGACGGCCAGAAACGCTATCTGCCGAACGGCCGCAAGGCGGGCTGCTTCTCGTTGA TCGGCGGTCCGCTATCTTCCGCGCCGTCCACGCTGCTGATTGGCGAGGGTTACGCCACGTGCGCGACGCTCGCGGCCGCG ACGGGCTGCCCGGCCGCCGTCGCGTTCGACGCCGGCAACCTGCACGCGGTCGCGACGGCGCTACGCGGCCAGTATCCGGA CACCCGCATCGTCGTGTGCGCCGACGACGACCACACGACGAAGGGCAATCCGGGCGTGACGAAGGCTCGCGCGGCGGCCG AAGCCGTCGCCGGCATCGTCGCGGTGCCGGACTTCGGTCCGAACCGTCCAGCGGCCGGGACGGACTTCAACGACCTGGCT GCGCACGTCGGCCCGGAGGCGGTGGCCGCCGCCGTGCAGGCTACGCTCGCGCCGGCCGGCTCGGCTGACGCTGGCAAGGG CAAGGCCGCTCCAGCCGCCACGAAGCCCGCCAAGCGCCCGAAAACGGCCCGCGCGCAGGACGGCAAGTCGCGGTTCGTCG TCGACGACAAGGGCGTGTGGTTTCACGGCTTCAACAATCAAGGCGACCCGCTCCCGCCGCATTGGGTCAGCACGCGGATC GACGTGATTGCGGAGACGCGAAACGAGATGAACAGCGAGTGGGGCTACCTGCTCGAATTCACGGACCGCGACGGCATCCT GAAACGATGGGCGGTGCCGGCCGGCCTCTTTGCCGGCGACGGTACAGAGCTGCGCCGCATGTTGCTCGATATGGGCGTGA AGCTTGGCGTGACGCAGATCGCCCGCACGCAGATAGCGAACTATGTGCAGATGGCGCAGCCGGACGAGCGCGTGCGCTGC GTGCCGCGCGTCGGCTGGCATCACGGCGCGTTCGTGCTGCCCGATCGCGTGATCGGCACCGGCAAAGAGTCGCTGATCTA TCAGGCCGACACGCCGATCCAGAGCCAGTTCAAGGAGCGCGGCACGCTGGACGACTGGCAGCGCGAGGTCGCGGCCTACT GCGTCGGCAATAGCCGGCTGCTGTTCTGCGTCGCTACCGCCTTCGCTGGTCCGTTGCTGCACTTCTCCGGGCTTCAGTCG GGCGGCTTTCACCTGCTCGGCACCACATCCAAAGGCAAGTCGACGGGCGGCGTCATCGCCGCGTCCGTGTTCGGCTCGCC GGACTACGTGCGGAGCTGGAAGGCGACCGACAACGCGCTCGAAGCTGTCGCGACGCAGCATAGCGACGCGCTGCTGATCC TCGATGAAATCGGGCAGGTCGAGCCGCGTCTGGTTGGCGATGTCATCTACATGCTTGCCAACGAGTCGGGCAAGGCCCGT GCGTCGCGTAGCGGCTCGGCAAAGCCGGTTCTCACGTGGCGGCTGCTGTTCTTGTCGAACGGCGAAAAGAGCGTGTCCGC GCTGATGGCCGAGGGCAACAAGCCGATGAAAGGCGGTATCGAAGTGCGCTTGCCCGCGATCCCGGCCGAGGTGGGCGAAA TGGGCGTCGTGGAGAGGCTGCACGGCTTCCCTACGCCGGCCGCTCTGATCGAGCATCTAGAGCGCCATGCCGGCATGCAC TACGGTACAGCCGGCCCCGCGTTCATCGAGTGGGCGTCGTCGCAGGCCGGCGAGCTGGCCGAGCATCTGCGTGTGCGCGT CGACGAGCTGGTCGGGCAATGGGTGCCGGACGGCTCGCATTCGCAGGTCGCACGCGTTGCCAAGCGGTTCTGCCTCGTTG CGGTGGCCGGCGAGCTGGCGACGGCGCACGGGCTGACCGGCTGGCCGGAGGGCGAAGCGGTCGAGGCCGCGCGTCGCTGC TTCGAGGGCTGGCTCGAACTTCGCGGCGGCACCGGCAATTCGGACGAAGCCGAAGCCGTGCGGCAGGTACAGCATTTCCT CGCCGCGCACGGCGATAACCGTTTCGTGTGGATGAACCGGGCACAGGACGACCATCGGCCGAACGTGCCGCATCGAGCGG GCTTCAAGCAGCACGTGAAGCGCGACGAGCGCCGCACGCCTATCGCCTCCGATCGGGAGTATTACGCCGAGTTCGGCGGC AAGATGAGCGCCGACGACGCGGAAAGCGTCGAGACGGAATACCTGATCGAAGCGGCCGTGTTCCGCAAGGACGTGTGCGC CGGCTTCGATCACAAGATCGTCGCCAAGGCACTGATGAAGCGGGGCGTGCTGATGCCGCGTAGCGACGGCTATCCGTACC GGCAGGAGTACATCCCCGGCCATGGGAAATTCATGGTCTACCGCGTGTTGCCGTCCATCTTCACGCTTGAGCTGTGA
Upstream 100 bases:
>100_bases AGGCATCGTCGCATCATTCAATTCTTCGTGCGTCGAGTCGGTGCTTGCCCGATATGGACTACTAATCGGGAGTCGACCGA CGCGCGTCCAGCGGGAATCT
Downstream 100 bases:
>100_bases AATGCGCCGCCGCCGTCCGGGAGGGCGGTGGCGGGCATTCCTTTGCGCGGCATTTTTGGCCCGCGCGTCAAAGTTACTTT GAGCGATCCGCTCCAGACGG
Product: primase 2
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 958; Mature: 957
Protein sequence:
>958_residues MSNAPMSEFERARVALGYVLPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKITINTLFH LAKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAELTEKQQAASALAESIWSAADPAPADHPYLVRKRIPVDALRV YRGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA TGCPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLA AHVGPEAVAAAVQATLAPAGSADAGKGKAAPAATKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRI DVIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC VPRVGWHHGAFVLPDRVIGTGKESLIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQS GGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKAR ASRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVERLHGFPTPAALIEHLERHAGMH YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPEGEAVEAARRC FEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGG KMSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL
Sequences:
>Translated_958_residues MSNAPMSEFERARVALGYVLPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKITINTLFH LAKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAELTEKQQAASALAESIWSAADPAPADHPYLVRKRIPVDALRV YRGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA TGCPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLA AHVGPEAVAAAVQATLAPAGSADAGKGKAAPAATKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRI DVIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC VPRVGWHHGAFVLPDRVIGTGKESLIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQS GGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKAR ASRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVERLHGFPTPAALIEHLERHAGMH YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPEGEAVEAARRC FEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGG KMSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL >Mature_957_residues SNAPMSEFERARVALGYVLPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKITINTLFHL AKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAELTEKQQAASALAESIWSAADPAPADHPYLVRKRIPVDALRVY RGGLCIGTAACDGALVIPARDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAAT GCPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIVAVPDFGPNRPAAGTDFNDLAA HVGPEAVAAAVQATLAPAGSADAGKGKAAPAATKPAKRPKTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRID VIAETRNEMNSEWGYLLEFTDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRCV PRVGWHHGAFVLPDRVIGTGKESLIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRLLFCVATAFAGPLLHFSGLQSG GFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNALEAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARA SRSGSAKPVLTWRLLFLSNGEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVERLHGFPTPAALIEHLERHAGMHY GTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELATAHGLTGWPEGEAVEAARRCF EGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNRAQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGK MSADDAESVETEYLIEAAVFRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: COG5519
COG function: function code L; Superfamily II helicase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 103580; Mature: 103449
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNAPMSEFERARVALGYVLPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKD CCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCH ARDVWKSFKGGKITINTLFHLAKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAEL HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TEKQQAASALAESIWSAADPAPADHPYLVRKRIPVDALRVYRGGLCIGTAACDGALVIPA HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEC RDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHH TGCPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIV CCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCEE AVPDFGPNRPAAGTDFNDLAAHVGPEAVAAAVQATLAPAGSADAGKGKAAPAATKPAKRP ECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRIDVIAETRNEMNSEWGYLLEF CCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE TDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC ECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VPRVGWHHGAFVLPDRVIGTGKESLIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRL ECCCCCCCCCEECCCHHHCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE LFCVATAFAGPLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNAL EEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHH EAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSN HHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECC GEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVERLHGFPTPAALIEHLERHAGMH CCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELA CCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TAHGLTGWPEGEAVEAARRCFEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNR HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC AQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGKMSADDAESVETEYLIEAAV CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH FRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEHEEHHHHHHEECC >Mature Secondary Structure SNAPMSEFERARVALGYVLPDDRDTWRQVGMALKAEFGEEGFALWNEWSQGAQNYNGKD CCCCHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCH ARDVWKSFKGGKITINTLFHLAKVGGFDPRAHRAKPVDPAERERQKAERAAREAAELAEL HHHHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH TEKQQAASALAESIWSAADPAPADHPYLVRKRIPVDALRVYRGGLCIGTAACDGALVIPA HHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCEEEEEC RDADGKLWTLEFVLTDGQKRYLPNGRKAGCFSLIGGPLSSAPSTLLIGEGYATCATLAAA CCCCCCEEEEEEEEECCCHHCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHHH TGCPAAVAFDAGNLHAVATALRGQYPDTRIVVCADDDHTTKGNPGVTKARAAAEAVAGIV CCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCEE AVPDFGPNRPAAGTDFNDLAAHVGPEAVAAAVQATLAPAGSADAGKGKAAPAATKPAKRP ECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KTARAQDGKSRFVVDDKGVWFHGFNNQGDPLPPHWVSTRIDVIAETRNEMNSEWGYLLEF CCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE TDRDGILKRWAVPAGLFAGDGTELRRMLLDMGVKLGVTQIARTQIANYVQMAQPDERVRC ECCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE VPRVGWHHGAFVLPDRVIGTGKESLIYQADTPIQSQFKERGTLDDWQREVAAYCVGNSRL ECCCCCCCCCEECCCHHHCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCEE LFCVATAFAGPLLHFSGLQSGGFHLLGTTSKGKSTGGVIAASVFGSPDYVRSWKATDNAL EEHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHCCCCCHHHH EAVATQHSDALLILDEIGQVEPRLVGDVIYMLANESGKARASRSGSAKPVLTWRLLFLSN HHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECC GEKSVSALMAEGNKPMKGGIEVRLPAIPAEVGEMGVVERLHGFPTPAALIEHLERHAGMH CCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC YGTAGPAFIEWASSQAGELAEHLRVRVDELVGQWVPDGSHSQVARVAKRFCLVAVAGELA CCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH TAHGLTGWPEGEAVEAARRCFEGWLELRGGTGNSDEAEAVRQVQHFLAAHGDNRFVWMNR HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC AQDDHRPNVPHRAGFKQHVKRDERRTPIASDREYYAEFGGKMSADDAESVETEYLIEAAV CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH FRKDVCAGFDHKIVAKALMKRGVLMPRSDGYPYRQEYIPGHGKFMVYRVLPSIFTLEL HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEHEEHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]