| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is sir1 [H]
Identifier: 238028378
GI number: 238028378
Start: 3219178
End: 3220857
Strand: Reverse
Name: sir1 [H]
Synonym: bglu_1g28390
Alternate gene names: 238028378
Gene position: 3220857-3219178 (Counterclockwise)
Preceding gene: 238028381
Following gene: 238028377
Centisome position: 82.45
GC content: 65.6
Gene sequence:
>1680_bases ATGTATCAGTACGACCAGTACGACCAGACGATCGTCGACGAACGCGTCGCGCAATATCGCGACCAGGTGCGTCGCCGGCT GTCGGGCGAATTGAGCGAGGAAGAATTCCGTCCGCTGCGCCTGCAGAACGGCCTGTACATGCAGCGTCACGCGTACATGC ACCGGATCGCGATTCCCTACGGCAATCTGCGCAGCGACCAGCTGCGCATGCTGGCACGCATCGCGCGCGAGCACGACCGC GGCTATGGCCACTTCTCGACGCGCTCGAACATCCAGTTCAACTGGATCCGGCTCGAGGAAACGCCGGACCTGCTCGCCAA GCTCGCGTCGGTACAGATGCACGGCATCCAGACCTCCGGCAACTGTATCCGCAACATCACGGCCGACCAGTTCGCCGGCG TCGCGCCCGACGAGACGATCGATCCGCGCCCGTGGGCCGAAATCCTGCGCCAGTGGTCGACGTTCCACCCCGAATTCGCC TGGCTGCCGCGCAAGTTCAAGATCGCCGTGTCCGGCTCGAAGGTGGACCGCGCCGCCGTGCAGATGCACGACCTGGGCGT CTACCTGTCGCGCAATGCCGACGGCGAGATCGTCGCCAGCATCCTCGCGGGCGGCGGCCTGGGCCGCACCCCGATCGTCG GCTCGATCATTCGCGAGAATCTGCCGTGGCAGCATCTGCTGACCTACTGCGAGGCGGTGCTGCGCGTCTATAACCGTTTC GGCCGCCGTGACAATCTCTATAAAGCGCGGATCAAGATCCTCGTGAAGGCGCTTTCGCCGGAGAAGTTCGCGCAGCAGGT CGAGGCGGAATGGCAGCACCTGAAGGACGGTCCCTCGACGCTGACGCAGGACGAAGTCGAGCGCGTGTCGCGCTGCTTCG CCCCGCCGGCCTACGAGAAGCTGGCCGACACCGACGCCTCCTACGAACAGCACCTGCTCGAGAACAAGGCGTTCGCACGC TGGGTCGAGCGCAACGTCGCGCCGCACAAGGTGTCGGGTTACGCGGCGGTCACGCTGTCGCTGAAGCCGAACGGCGTGGC GCCGGGCGACGCAACCGACGCGCAGATGGAGGCGGTGGCCGACTGGGCCGATGCCTATTCGTTCGGCGAGCTGCGCGTGT CGCACGAGCAGAACCTGATTCTCGCCAACGTGAAGAAGCGCGACCTGTTCGAGCTGTGGGAAAAGGCCAAGGCGGTCGGC TTCGCGACGCCGAACATCGGCCTGCTGACCGACATCATCGCGTGCCCGGGCGGCGATTTCTGCTCGCTGGCGAACGCCAA GTCGATCCCGATCGCGCAGGCGATCCAGGAGCGTTTCGACGATCTCGACTACGTCTACGACCTCGGCGAGATGTCGCTGA ACATCTCGGGCTGCATGAACTCGTGCGGTCACCACCACGTCGGCAACATCGGCATTCTCGGCGTCGACAAGGACGGCTCG GAGTGGTACCAGGTGTCGCTCGGCGGCGAGCAGGGCACGGGGCAGGACGGCCTGAAGCTGGGCCGCGTGATCGGCCCGTC GTTCTCGGCCGAGGAAGTGCCCGACGTGATCACGAAGCTGGTCGATACCTACGTCGAGTCGCGCATCGACGGCGAGCGCT TCATCGACACCTACAACCGCATCGGCATCGCGCCGTTCAAGGAGCGGGTCTACGCGGCGCGCCAGCCGGCCCACGCGTAA
Upstream 100 bases:
>100_bases CGGGGAGCAGCCGGCTCGGCGTGGCGGGCGCGAACGAGGCAGAATTCAGGCCTGGCGTGGCTAGGACGCCAAGCCGTCAA CACGAAACCTGGGGTCCCCA
Downstream 100 bases:
>100_bases CCCCAAGAGGAATTCAGCAGATGGCTTCGATTATCAAGAACCGCGCAGTGACCGACGACGCCTGGCAGGTCGTGCGCGCG GGCGAGGACGGCGCGCTGCC
Product: nitrite/sulfite reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPYGNLRSDQLRMLARIAREHDR GYGHFSTRSNIQFNWIRLEETPDLLAKLASVQMHGIQTSGNCIRNITADQFAGVAPDETIDPRPWAEILRQWSTFHPEFA WLPRKFKIAVSGSKVDRAAVQMHDLGVYLSRNADGEIVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRF GRRDNLYKARIKILVKALSPEKFAQQVEAEWQHLKDGPSTLTQDEVERVSRCFAPPAYEKLADTDASYEQHLLENKAFAR WVERNVAPHKVSGYAAVTLSLKPNGVAPGDATDAQMEAVADWADAYSFGELRVSHEQNLILANVKKRDLFELWEKAKAVG FATPNIGLLTDIIACPGGDFCSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGS EWYQVSLGGEQGTGQDGLKLGRVIGPSFSAEEVPDVITKLVDTYVESRIDGERFIDTYNRIGIAPFKERVYAARQPAHA
Sequences:
>Translated_559_residues MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPYGNLRSDQLRMLARIAREHDR GYGHFSTRSNIQFNWIRLEETPDLLAKLASVQMHGIQTSGNCIRNITADQFAGVAPDETIDPRPWAEILRQWSTFHPEFA WLPRKFKIAVSGSKVDRAAVQMHDLGVYLSRNADGEIVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRF GRRDNLYKARIKILVKALSPEKFAQQVEAEWQHLKDGPSTLTQDEVERVSRCFAPPAYEKLADTDASYEQHLLENKAFAR WVERNVAPHKVSGYAAVTLSLKPNGVAPGDATDAQMEAVADWADAYSFGELRVSHEQNLILANVKKRDLFELWEKAKAVG FATPNIGLLTDIIACPGGDFCSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGS EWYQVSLGGEQGTGQDGLKLGRVIGPSFSAEEVPDVITKLVDTYVESRIDGERFIDTYNRIGIAPFKERVYAARQPAHA >Mature_559_residues MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPYGNLRSDQLRMLARIAREHDR GYGHFSTRSNIQFNWIRLEETPDLLAKLASVQMHGIQTSGNCIRNITADQFAGVAPDETIDPRPWAEILRQWSTFHPEFA WLPRKFKIAVSGSKVDRAAVQMHDLGVYLSRNADGEIVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRF GRRDNLYKARIKILVKALSPEKFAQQVEAEWQHLKDGPSTLTQDEVERVSRCFAPPAYEKLADTDASYEQHLLENKAFAR WVERNVAPHKVSGYAAVTLSLKPNGVAPGDATDAQMEAVADWADAYSFGELRVSHEQNLILANVKKRDLFELWEKAKAVG FATPNIGLLTDIIACPGGDFCSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGS EWYQVSLGGEQGTGQDGLKLGRVIGPSFSAEEVPDVITKLVDTYVESRIDGERFIDTYNRIGIAPFKERVYAARQPAHA
Specific function: This Enzyme Catalyzes The 6-Electron Reduction Of Sulfite To Sulfide. This Is One Of Several Activities Required For The Biosynthesis Of L-Cysteine From Sulfate. [C]
COG id: COG0155
COG function: function code P; Sulfite reductase, beta subunit (hemoprotein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family [H]
Homologues:
None
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005117 - InterPro: IPR006067 - InterPro: IPR006066 [H]
Pfam domain/function: PF01077 NIR_SIR; PF03460 NIR_SIR_ferr [H]
EC number: =1.8.7.1 [H]
Molecular weight: Translated: 62896; Mature: 62896
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPY CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHCCCCHHHHHHHHHHHCCCC GNLRSDQLRMLARIAREHDRGYGHFSTRSNIQFNWIRLEETPDLLAKLASVQMHGIQTSG CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCC NCIRNITADQFAGVAPDETIDPRPWAEILRQWSTFHPEFAWLPRKFKIAVSGSKVDRAAV CHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCHHHHHH QMHDLGVYLSRNADGEIVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRF HHHHCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GRRDNLYKARIKILVKALSPEKFAQQVEAEWQHLKDGPSTLTQDEVERVSRCFAPPAYEK CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHH LADTDASYEQHLLENKAFARWVERNVAPHKVSGYAAVTLSLKPNGVAPGDATDAQMEAVA HHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEECCCCCCCCCCCHHHHHHHH DWADAYSFGELRVSHEQNLILANVKKRDLFELWEKAKAVGFATPNIGLLTDIIACPGGDF HHHHHCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCH CSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGS HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCCEEEEEECCCCC EWYQVSLGGEQGTGQDGLKLGRVIGPSFSAEEVPDVITKLVDTYVESRIDGERFIDTYNR CEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IGIAPFKERVYAARQPAHA CCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MYQYDQYDQTIVDERVAQYRDQVRRRLSGELSEEEFRPLRLQNGLYMQRHAYMHRIAIPY CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHCCCCHHHHHHHHHHHCCCC GNLRSDQLRMLARIAREHDRGYGHFSTRSNIQFNWIRLEETPDLLAKLASVQMHGIQTSG CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCC NCIRNITADQFAGVAPDETIDPRPWAEILRQWSTFHPEFAWLPRKFKIAVSGSKVDRAAV CHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCHHHHHH QMHDLGVYLSRNADGEIVASILAGGGLGRTPIVGSIIRENLPWQHLLTYCEAVLRVYNRF HHHHCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GRRDNLYKARIKILVKALSPEKFAQQVEAEWQHLKDGPSTLTQDEVERVSRCFAPPAYEK CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHH LADTDASYEQHLLENKAFARWVERNVAPHKVSGYAAVTLSLKPNGVAPGDATDAQMEAVA HHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEECCCCCCCCCCCHHHHHHHH DWADAYSFGELRVSHEQNLILANVKKRDLFELWEKAKAVGFATPNIGLLTDIIACPGGDF HHHHHCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCH CSLANAKSIPIAQAIQERFDDLDYVYDLGEMSLNISGCMNSCGHHHVGNIGILGVDKDGS HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCCEEEEEECCCCC EWYQVSLGGEQGTGQDGLKLGRVIGPSFSAEEVPDVITKLVDTYVESRIDGERFIDTYNR CEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH IGIAPFKERVYAARQPAHA CCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA