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The map label for this gene is ltrA [H]

Identifier: 238028095

GI number: 238028095

Start: 2905067

End: 2906050

Strand: Reverse

Name: ltrA [H]

Synonym: bglu_1g25460

Alternate gene names: 238028095

Gene position: 2906050-2905067 (Counterclockwise)

Preceding gene: 238028099

Following gene: 238028085

Centisome position: 74.39

GC content: 69.31

Gene sequence:

>984_bases
ATGAATCTCGATGCACACAACCTGAACGACCTGATGTACTTCTCGCAGGTCGTCGAACACGGCGGCTTCTCGGCCGCGGA
ACGCGTACTCGGCATCTCGAAGTCGCGGCTGTCGCGGCGCTTGACGGAACTCGAGGCGACGCTGGGCGTGCGCCTGCTGC
AGCGCTCGACGCGCAAGCTCGCGCTGACGGAGGCCGGGCAGCTGTTCTACCAGCACTGCCAGGCGATGCTGGCCGAGGCG
CAGGCGGCGATGAACGCGGTCCAGCAACTGCGCGCCTCGCCGCGCGGCACGGTGCGCGTCAGCGTGCCGGTCACCCTGTC
GCAGACGATGATGTCGCGACTGCTGCCGGAATTCCTGCACCGCTTCCCCGAGGTGCGCGTGCTGGTGCGCGTGACCAACC
AGGTGATCGACCTGTTCGAGGATTCGATCGACGTGGCGTTGCGCGTGCGCTCCGAGCCGCCCGAGAACGCCAACATCGTG
GTGCGTCCGCTATGGCGCACCGAGCAGATGCTGGTCGGCTCGCCGAGCCTGCTGAGCCAGAACGCGCCGCCGCTCGCGCC
CGGCGACCTGGGGCGCTTCGAGACGCTCGACACGCCGTCGGGCGACGGCCGCCATGTGTTTACGCTGATCGCGCCGGACG
GGACGCGCCATCAGCACGAGCACGAGCCGCGGCTCGTGACGGCCGATCTGATGACGATCCGCGAAGCCGTGCTGGACGGG
GTCGGGATCGCCGCGCTGCCCGAGATGATGTATGGCAACGCGCTGCGCGCGGGACAGCTGTCGCCGGTGATGCCGGGCTG
GACGCTGCCGGTGCCGCAGCTCTACGCGGTATTCGTGTCGCGCCAGGGCATGCCGCCGGCGGTGCGTTCGTTCGTCGATT
TCCTCGTCGAAAAGCTCGACAGCGACTATCGCGAGCCCCCTTGTCCCGAGCGCGCCGCGAAGCAGGCCGAGAAGCCGGCC
GAGCAGAGCGCCGCGGCGGCGTGA

Upstream 100 bases:

>100_bases
TGAAATGATCGAGCTGGCTGGTCGCAGCTATTATATGGACCAGCCAGCGCTTGAAATCGGCGCGATCCGCAATGGATCGT
TCTGGAATTGGAACGATGAA

Downstream 100 bases:

>100_bases
AGCGGTTTTGTCATCGAAGCGCCGCCTGCCATCGCGAGATTCAATCGGGGCACGCTTGAATGCCCGCAGCGCGCGGCCTA
TATTGAAATCCCAATCGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHCQAMLAEA
QAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLHRFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIV
VRPLWRTEQMLVGSPSLLSQNAPPLAPGDLGRFETLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVLDG
VGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEKLDSDYREPPCPERAAKQAEKPA
EQSAAAA

Sequences:

>Translated_327_residues
MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHCQAMLAEA
QAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLHRFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIV
VRPLWRTEQMLVGSPSLLSQNAPPLAPGDLGRFETLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVLDG
VGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEKLDSDYREPPCPERAAKQAEKPA
EQSAAAA
>Mature_327_residues
MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKLALTEAGQLFYQHCQAMLAEA
QAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLHRFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIV
VRPLWRTEQMLVGSPSLLSQNAPPLAPGDLGRFETLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVLDG
VGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEKLDSDYREPPCPERAAKQAEKPA
EQSAAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=30.3754266211604, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=31.9727891156463, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI87081978, Length=308, Percent_Identity=26.6233766233766, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.4808362369338, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=25.9259259259259, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=24.8322147651007, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=27.1186440677966, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788481, Length=301, Percent_Identity=24.9169435215947, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=32.6086956521739, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=23.2558139534884, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=25.1968503937008, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=274, Percent_Identity=25.5474452554745, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788748, Length=124, Percent_Identity=30.6451612903226, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=291, Percent_Identity=22.3367697594502, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36113; Mature: 36113

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHH
RFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLSQ
HCHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCCHHHCCCCHHHCC
NAPPLAPGDLGRFETLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHCC
VGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SDYREPPCPERAAKQAEKPAEQSAAAA
HHCCCCCCHHHHHHHHCCCHHHHCCCC
>Mature Secondary Structure
MNLDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEATLGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGQLFYQHCQAMLAEAQAAMNAVQQLRASPRGTVRVSVPVTLSQTMMSRLLPEFLH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHH
RFPEVRVLVRVTNQVIDLFEDSIDVALRVRSEPPENANIVVRPLWRTEQMLVGSPSLLSQ
HCHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCCHHHCCCCHHHCC
NAPPLAPGDLGRFETLDTPSGDGRHVFTLIAPDGTRHQHEHEPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHCC
VGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRSFVDFLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SDYREPPCPERAAKQAEKPAEQSAAAA
HHCCCCCCHHHHHHHHCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]