Click here to switch to the map view.

The map label for this gene is ydjR [C]

Identifier: 238028067

GI number: 238028067

Start: 2864359

End: 2864991

Strand: Reverse

Name: ydjR [C]

Synonym: bglu_1g25180

Alternate gene names: 238028067

Gene position: 2864991-2864359 (Counterclockwise)

Preceding gene: 238028068

Following gene: 238028066

Centisome position: 73.34

GC content: 76.15

Gene sequence:

>633_bases
ATGTCGATGGGCCTGGCAGCGCGCCTGTCGCTGATCCGCGCGGATCGACTCGTCGCCGCGCCCTGGAAGAACGGCGGCGG
CGTGACGCGCGAGATCGCCGCCGAGCCGCCCGGCGCCTCGCTCGATGCGTTCGCGTGGCGCGTGAGCGTGGCCGACGTGG
CGCAGCCCGGGCCGTTCTCGCGCTTTCCCGGCGTCGATCGCACGCTGGTGCTGCTGTCGGGCGCCGGCATGACGCTGGTG
GACGGGAACGGCGCACGGCAGGTGCTGGCCGCGCCGCTCGAGCACCTCGCGTTCGCCGGCGAGACGCCGCTCTCGGCCGA
GCTGGCCGACGGCCCGACGCGCGACTTCAACCTGATGACGCGCCGCGCCGTGATTAGCGGCCGCGTGTCGGTACTCGGCG
AGGGCGGCGCGATCGCCTCGGACGCGCCCACGCTGCTGCTGTTCTGCGCGTGCGGGGCGCCGAGCGTCGCGCTCGACGGC
GCCGGGGCCGTCACGCTCGGCGCGCTCGACACGCTGCGCGTCGACGCGCATGCCGGGGCCGGCGTGGGCGGCCGCATCAC
CGGCACGGTGCGCGGCGAGGGCGCGCTGCTCTGTATCGAACTGACACCGAGGGCGGCCGCGGCGGCCGCATGA

Upstream 100 bases:

>100_bases
CCACGGGGGTGATGCGCCATGCCGATGCCGGCTATGAACTCGCGCAGCGCACCGCGCGCGAGGCCGGTCTCAAGCTGCCG
ATGCTGGGGCGTTGAGCGCC

Downstream 100 bases:

>100_bases
ACCGATGACTCCTACCGTCTGGCATCACCTCAATCTGTGCGCCGCGGGCGACCCGCGCGAGACGCTCGCCGACGCGGCGC
TCGCCGTGGACGCCAGCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSMGLAARLSLIRADRLVAAPWKNGGGVTREIAAEPPGASLDAFAWRVSVADVAQPGPFSRFPGVDRTLVLLSGAGMTLV
DGNGARQVLAAPLEHLAFAGETPLSAELADGPTRDFNLMTRRAVISGRVSVLGEGGAIASDAPTLLLFCACGAPSVALDG
AGAVTLGALDTLRVDAHAGAGVGGRITGTVRGEGALLCIELTPRAAAAAA

Sequences:

>Translated_210_residues
MSMGLAARLSLIRADRLVAAPWKNGGGVTREIAAEPPGASLDAFAWRVSVADVAQPGPFSRFPGVDRTLVLLSGAGMTLV
DGNGARQVLAAPLEHLAFAGETPLSAELADGPTRDFNLMTRRAVISGRVSVLGEGGAIASDAPTLLLFCACGAPSVALDG
AGAVTLGALDTLRVDAHAGAGVGGRITGTVRGEGALLCIELTPRAAAAAA
>Mature_209_residues
SMGLAARLSLIRADRLVAAPWKNGGGVTREIAAEPPGASLDAFAWRVSVADVAQPGPFSRFPGVDRTLVLLSGAGMTLVD
GNGARQVLAAPLEHLAFAGETPLSAELADGPTRDFNLMTRRAVISGRVSVLGEGGAIASDAPTLLLFCACGAPSVALDGA
GAVTLGALDTLRVDAHAGAGVGGRITGTVRGEGALLCIELTPRAAAAAA

Specific function: Unknown

COG id: COG3758

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydjR [H]

Homologues:

Organism=Escherichia coli, GI87081963, Length=111, Percent_Identity=38.7387387387387, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR010282 [H]

Pfam domain/function: PF05962 HutD [H]

EC number: NA

Molecular weight: Translated: 20990; Mature: 20859

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMGLAARLSLIRADRLVAAPWKNGGGVTREIAAEPPGASLDAFAWRVSVADVAQPGPFS
CCCCHHHHHHHHHHCCEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCC
RFPGVDRTLVLLSGAGMTLVDGNGARQVLAAPLEHLAFAGETPLSAELADGPTRDFNLMT
CCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
RRAVISGRVSVLGEGGAIASDAPTLLLFCACGAPSVALDGAGAVTLGALDTLRVDAHAGA
HHHHHCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCEEEECCEEEEEEECCCCC
GVGGRITGTVRGEGALLCIELTPRAAAAAA
CCCCEEEEEEECCCEEEEEEECCCHHCCCC
>Mature Secondary Structure 
SMGLAARLSLIRADRLVAAPWKNGGGVTREIAAEPPGASLDAFAWRVSVADVAQPGPFS
CCCHHHHHHHHHHCCEEECCCCCCCCCEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCC
RFPGVDRTLVLLSGAGMTLVDGNGARQVLAAPLEHLAFAGETPLSAELADGPTRDFNLMT
CCCCCCEEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
RRAVISGRVSVLGEGGAIASDAPTLLLFCACGAPSVALDGAGAVTLGALDTLRVDAHAGA
HHHHHCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEECCCCEEEECCEEEEEEECCCCC
GVGGRITGTVRGEGALLCIELTPRAAAAAA
CCCCEEEEEEECCCEEEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2203753 [H]