| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is dctS [H]
Identifier: 238028032
GI number: 238028032
Start: 2819534
End: 2822038
Strand: Direct
Name: dctS [H]
Synonym: bglu_1g24820
Alternate gene names: 238028032
Gene position: 2819534-2822038 (Clockwise)
Preceding gene: 238028028
Following gene: 238028033
Centisome position: 72.18
GC content: 67.11
Gene sequence:
>2505_bases ATGTTGACCGATCGGCTATTCGCACGCTCGGCGCGAGCGTCCGGTGCGTCGGCCGACTCGCAGCCGTCCCGCTGGCACCA CGGCCCGTGGTGGTCCAATTCCTATCTGTTGACGCCGCTGCTGTCGATCCTGGTGTTCCTGGTGGTGATGAGCCTGATTC TGTGGAGCCTCAACCGCCGCGAGCAGCAGCAGCAGGAAGACACCCTCTATCGCAACGTCGCCTGGGCCCAGCAGCAGATC CGCCTGTCGATGACGGGCGCCCAGGAGCAGCTGCAGGCGTTCGCGCGCGACGTCGCGCTCGGCCGCATCGACGAGCGCGG CTTCCAGGCCGCGGCCGGGGACGTGATGCAGGCGCACCCGGAAATCCTCTATCTGAACTGGTATGTGGCACCCGGCACCG CGCGCTGGCCCGACATGCAGCTGCCGACGCTCGGCCAGCGGCTCGCCCGGCCCAACGACGCGCAACTGGCCGAGATCGTG CGCGGCGCCTGGCGCGACGCGCACGAATCGCGCCGGCAGGCCTACTCGGCGCTCGCCTACGACGATTTCGGCAACGGCTT CGTGACGCTGCAGACCCCCGTCACACGCGACCGCGAGTACCTGGGCTCGATCGCCACGGTGTTCTCGGTGGAGGGCATCC TCAAGCACGACATCCCGCCCGAGCTGTCGGCGAAGTACAAGATTTCGATCACCGACGTCAACAACCGCGAGCTGGCCTCG ACCTCCTCGCGCCCGCGGCTGCCGCGCGACGCCCATTACGACCTGCCGCTCGACCCGCCCGGCCAGGGCCTGACGGTGCG CGTCTATGCGTATCCGCAGATGACGAACCTGACGAACAACACGCTCGTCTGGCTCGTCGCGGGGCTGTCCTGCTTCGTGC TCTGGAGCCTCTGGAGCCTCTGGAAACACACGCGACAGCGCTTCGAGGCGCAGCAGGCGCTGTACGCGGAGGCGTTCTTT CGCCGCGCGATGGAAAATTCAGTGCTGATCGGCATGCGCGTGCTCGACATGCACGGCCGCATCACTCACGTGAACCCAGC GTTTTGCCGCATGACGGGCTGGGACGAGGAGGACCTGGTCGGCAAGGTCGCGCCGTTCCCCTACTGGCCGCGCGACGCCT ACCCGGAGATGCAGCGCCAGCTCGACATGACGCTGCGCGGCAAGGCGCCGTCCTCGGGCTTCGAACTGCGAGTGCGCCGC AAGGACGCCTCGATGTTCCATGCGCGGCTCTACGTCTCGCCGCTGATCGACAGCTCGGGCCGCCAGACCGGCTGGATGTC GTCGATGACCGACATCACCGAGCCGAAACGCGCGCGCGAGGAGCTGGCCGCCGCGCACGAGCGCTTCACCACGGTGCTGG AAAGCCTCGACGCGGCCGTCTCGGTGCTGGCCGCCGACGAGGCCGAGCTGCTGTTCGCCAACCGCTACTACCGCCACCTG TTCGGGATTCGTCCCGACGGCCACCTGGAGCTGTCGGGCGGCGGCTTCGACTCGACCCAGGCCTCGTCGGACTCGATCGA CATGGTCGACGCGTTCGCCGGGCTGCCCGCCACCGCGCTGACCGAGAGCACGGCCGACGCGCAGGAAGTCTACGTCGAGA GCATCCAGAAGTGGTTCGAGGTGCGCCGCCAATACATCCAGTGGGTCGACGGCCATTTGGCACAGATGCAGATCGCCACC GACATCACGACCCGCAAGAAGGCCCAGGAACTGGCACACCAGCAGGAAGAGAAGCTGCAGTTCACGAGCCGTCTGATGAC GATGGGCGAAATGGCTTCGTCGATCGCGCACGAACTGAACCAGCCGCTCGCGGCCATCAACAACTACTGCTCGGGCACCG TCGCGCTCGTCAAGAGCGGGCGCGGCACCGCCGAGACGCTGCTGCCGGCGCTCGAAAAAACCGCCCAGCAGGCGCTGCGC GCCGGCATGATCGTCAAGCGCATCCGTGAGTTCGTGAAGCGCAGCGAGCCCAAGCGGCAGGCCGCGCGCGTGGCCGACAT CATCGCCGACGCGGTCGGACTCGCCGAAATCGAGGCTCGCAAGCGGCGCATCCGGATCGTCACCGAAATCCGCGCCAGAA TGCCTATCATCTATGTGGACCCGGTGCTGATCGAGCAGGTCCTGATGAACCTGATGAAGAATGCCGCCGAGGCGATGGGC GACGTGAAGGACCCGCAGGCCGACGGACTGATCCGCGTGGTGGCCGACCTCGAGGCCGGCTTCGTCGACATCCGCGTGAT CGACCAGGGCCCGGGCGTCGACGAGGCCAGCGCCGAGCGTCTGTTCGAACCGTTCTACAGCACCAAGTCCGACGGCATGG GCATGGGGCTTAATATCTGTCGATCGATCATCGAGTCGCACCGCGGGCGGCTCTGGGTCGTCAACAACATCGAGGCGGAC GGCCGCGTCTCCGGCGCGACGTTCCATTGCAGCCTGCCCATCGGGGCACCCGAGAACCACGGCCGCGGCGGCGTGGCATC ACACACTGTTACGGGAGAGATATGA
Upstream 100 bases:
>100_bases CGCACCCTTGCGGCCGCCCTTTCAGGCGACAAGTTTTGCTTTCAGTTCAATATTGCGACACCGCGTTTGGCCCGCAATCC CCTGAGCTACAATGCGTGCC
Downstream 100 bases:
>100_bases ATAGCCCTGTCACCACCCCTCAGGAAACCGTCTTTGTCGTCGACGATGACGAGGCCGTGCGCGATTCGCTGCGCTGGCTG CTGGAGGCGAACGGCTATCG
Product: Sensory box histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MLTDRLFARSARASGASADSQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLYRNVAWAQQQI RLSMTGAQEQLQAFARDVALGRIDERGFQAAAGDVMQAHPEILYLNWYVAPGTARWPDMQLPTLGQRLARPNDAQLAEIV RGAWRDAHESRRQAYSALAYDDFGNGFVTLQTPVTRDREYLGSIATVFSVEGILKHDIPPELSAKYKISITDVNNRELAS TSSRPRLPRDAHYDLPLDPPGQGLTVRVYAYPQMTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFF RRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEEDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRR KDASMFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHL FGIRPDGHLELSGGGFDSTQASSDSIDMVDAFAGLPATALTESTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIAT DITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTVALVKSGRGTAETLLPALEKTAQQALR AGMIVKRIREFVKRSEPKRQAARVADIIADAVGLAEIEARKRRIRIVTEIRARMPIIYVDPVLIEQVLMNLMKNAAEAMG DVKDPQADGLIRVVADLEAGFVDIRVIDQGPGVDEASAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNIEAD GRVSGATFHCSLPIGAPENHGRGGVASHTVTGEI
Sequences:
>Translated_834_residues MLTDRLFARSARASGASADSQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLYRNVAWAQQQI RLSMTGAQEQLQAFARDVALGRIDERGFQAAAGDVMQAHPEILYLNWYVAPGTARWPDMQLPTLGQRLARPNDAQLAEIV RGAWRDAHESRRQAYSALAYDDFGNGFVTLQTPVTRDREYLGSIATVFSVEGILKHDIPPELSAKYKISITDVNNRELAS TSSRPRLPRDAHYDLPLDPPGQGLTVRVYAYPQMTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFF RRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEEDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRR KDASMFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHL FGIRPDGHLELSGGGFDSTQASSDSIDMVDAFAGLPATALTESTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIAT DITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTVALVKSGRGTAETLLPALEKTAQQALR AGMIVKRIREFVKRSEPKRQAARVADIIADAVGLAEIEARKRRIRIVTEIRARMPIIYVDPVLIEQVLMNLMKNAAEAMG DVKDPQADGLIRVVADLEAGFVDIRVIDQGPGVDEASAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNIEAD GRVSGATFHCSLPIGAPENHGRGGVASHTVTGEI >Mature_834_residues MLTDRLFARSARASGASADSQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLYRNVAWAQQQI RLSMTGAQEQLQAFARDVALGRIDERGFQAAAGDVMQAHPEILYLNWYVAPGTARWPDMQLPTLGQRLARPNDAQLAEIV RGAWRDAHESRRQAYSALAYDDFGNGFVTLQTPVTRDREYLGSIATVFSVEGILKHDIPPELSAKYKISITDVNNRELAS TSSRPRLPRDAHYDLPLDPPGQGLTVRVYAYPQMTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFF RRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEEDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRR KDASMFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHL FGIRPDGHLELSGGGFDSTQASSDSIDMVDAFAGLPATALTESTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIAT DITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTVALVKSGRGTAETLLPALEKTAQQALR AGMIVKRIREFVKRSEPKRQAARVADIIADAVGLAEIEARKRRIRIVTEIRARMPIIYVDPVLIEQVLMNLMKNAAEAMG DVKDPQADGLIRVVADLEAGFVDIRVIDQGPGVDEASAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNIEAD GRVSGATFHCSLPIGAPENHGRGGVASHTVTGEI
Specific function: Member of the two-component regulatory system dctS/dctR involved in the transport of C4-dicarboxylates. DctS functions as a membrane-associated protein kinase that phosphorylates dctR in response to environmental signals [H]
COG id: COG2202
COG function: function code T; FOG: PAS/PAC domain
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=28.8702928870293, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1788549, Length=272, Percent_Identity=26.4705882352941, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1786912, Length=124, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93424; Mature: 93424
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDRLFARSARASGASADSQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRR CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EQQQQEDTLYRNVAWAQQQIRLSMTGAQEQLQAFARDVALGRIDERGFQAAAGDVMQAHP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHCHHHHHCHHHHCCC EILYLNWYVAPGTARWPDMQLPTLGQRLARPNDAQLAEIVRGAWRDAHESRRQAYSALAY CEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDFGNGFVTLQTPVTRDREYLGSIATVFSVEGILKHDIPPELSAKYKISITDVNNRELAS HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC TSSRPRLPRDAHYDLPLDPPGQGLTVRVYAYPQMTNLTNNTLVWLVAGLSCFVLWSLWSL CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH WKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEEDLV HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCHHHEEECCCCHHHHH GKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRRKDASMFHARLYVSPLIDSSG HCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCC RQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHL CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FGIRPDGHLELSGGGFDSTQASSDSIDMVDAFAGLPATALTESTADAQEVYVESIQKWFE HCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH VRRQYIQWVDGHLAQMQIATDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELN HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPLAAINNYCSGTVALVKSGRGTAETLLPALEKTAQQALRAGMIVKRIREFVKRSEPKRQ CHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AARVADIIADAVGLAEIEARKRRIRIVTEIRARMPIIYVDPVLIEQVLMNLMKNAAEAMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHC DVKDPQADGLIRVVADLEAGFVDIRVIDQGPGVDEASAERLFEPFYSTKSDGMGMGLNIC CCCCCCCCCCEEEEEHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH RSIIESHRGRLWVVNNIEADGRVSGATFHCSLPIGAPENHGRGGVASHTVTGEI HHHHHHCCCCEEEEECCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLTDRLFARSARASGASADSQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRR CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EQQQQEDTLYRNVAWAQQQIRLSMTGAQEQLQAFARDVALGRIDERGFQAAAGDVMQAHP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHCHHHHHCHHHHCCC EILYLNWYVAPGTARWPDMQLPTLGQRLARPNDAQLAEIVRGAWRDAHESRRQAYSALAY CEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDFGNGFVTLQTPVTRDREYLGSIATVFSVEGILKHDIPPELSAKYKISITDVNNRELAS HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC TSSRPRLPRDAHYDLPLDPPGQGLTVRVYAYPQMTNLTNNTLVWLVAGLSCFVLWSLWSL CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH WKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEEDLV HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCHHHEEECCCCHHHHH GKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRRKDASMFHARLYVSPLIDSSG HCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCC RQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHL CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FGIRPDGHLELSGGGFDSTQASSDSIDMVDAFAGLPATALTESTADAQEVYVESIQKWFE HCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHH VRRQYIQWVDGHLAQMQIATDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELN HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC QPLAAINNYCSGTVALVKSGRGTAETLLPALEKTAQQALRAGMIVKRIREFVKRSEPKRQ CHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AARVADIIADAVGLAEIEARKRRIRIVTEIRARMPIIYVDPVLIEQVLMNLMKNAAEAMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHC DVKDPQADGLIRVVADLEAGFVDIRVIDQGPGVDEASAERLFEPFYSTKSDGMGMGLNIC CCCCCCCCCCEEEEEHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH RSIIESHRGRLWVVNNIEADGRVSGATFHCSLPIGAPENHGRGGVASHTVTGEI HHHHHHCCCCEEEEECCCCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8455557 [H]