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The map label for this gene is ycfD [H]

Identifier: 238027987

GI number: 238027987

Start: 2768102

End: 2769370

Strand: Direct

Name: ycfD [H]

Synonym: bglu_1g24360

Alternate gene names: 238027987

Gene position: 2768102-2769370 (Clockwise)

Preceding gene: 238027985

Following gene: 238027998

Centisome position: 70.86

GC content: 65.56

Gene sequence:

>1269_bases
TTGCGATTTTCATCCAAATCTCCCAATTACCAGCCGCATTATACGATGTCCCAACGGTCCGAAACCGAACCGACGGGCGC
TGCCCGAGCCCCGTCCGGCGCGCCCCTGCCCGATACCGCCACGCCGCTGCTCGGCAACCTGACGCCGTCGCAATTCATGC
GCCGCCACTGGCAGAAAAAGCCGCTGCTGATCCGCCAGGCGATCCCGGGCATCGTCCCGCCGCTCTCGCGCGACGCGCTG
TTCGAGCTGGCCGGCGACTATGACACCGAGTCGCGGCTCATCACCCATTTTCGTAACAGATGGCAACTGGCGCAGGGACC
GTTCGAGCTCGACTCGCTGCCGTCGGTGAGCAAGCGCGAGTGGACGCTGCTGGTGCAAGGCGTGGACCTGCACGACGATG
CCGCGCGCGCGCTGCTCGAGCGGTTTCGCTTCATCCCCGACGCGCGCCTCGACGACCTGATGATCTCCTACGCGACCGAC
GGCGGCGGCGTGGGTCCGCACTTCGATTCCTATGACGTATTCCTGCTGCAGGTGCATGGCCGGCGGCGCTGGCGCATCGG
CGCGCAGCAGGACCTGACGCTGCGCGAGGACCTGCCGCTGAAGGTGCTCGCTCGTTTCGAGCCGACCGACGAGTGGGTGC
TCGAACCCGGCGACATGCTCTATCTGCCGCCGCACATCGCCCATGACGGCATCGCCGAAGGCGAATGCATGACCTGCTCG
ATCGGCTTTCGCGCCCCGTCCGCGGGGGAATTGACGGGGCAGTTCCTCTACTACCTCGCGGAACGTGGTGCGCTGCGACA
AGGCGCGCGCGCGGGCGAACTCTATCGCGATCCCGCGCAGCCGCCGGTCGACGATCCGGCGCGACTGCCGGCGGCGCTGG
TCGAGCGCGTCGAGACGATACTGAAAGGGATCCGCTGGACCACGCGCGACGTCGAGAACTTCCTCGGCAGCTACCTCAGC
GAGCCGAAATCGAACGTGGTGTTCGACGCCCCGGAAAGGCCGCTCGGCGAGGCCGCCTTCGTCGCCCAGGCGAGCCGCCG
CGGCATTCGTCTCGACAGGAAAGCGGCATTGCTGTATAACGCGCGATCGTACTTCATCAATGGCGAAGAAAATCCGCTCG
CCGGCAACGCGAAATGGCTGCCGGAATTGGCTGATCGACGTCATCTGGGGGCGAAACGCTTTGTAACATACTCCCGTCAC
CCCCTCATGACAGCCTTGCTGCACGAGTGGTATTGTGCGGGCTGGATCAGGCTGGGCGACCTGTCGTAA

Upstream 100 bases:

>100_bases
TCATAGCCGCCGTGCAGATAGACCATCGGCTCGTCGCTCTCTTCGATCAGGTTGCCTTGCGTGTCAGACAGCTTGTATGC
GACCGACACGACGGTGTTTT

Downstream 100 bases:

>100_bases
GGTTGCCCTCGCAGGAGCCCATACCAGTCAAACTTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTCGA
TACGAAAGTGCATATAATTT

Product: Cupin superfamily protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MRFSSKSPNYQPHYTMSQRSETEPTGAARAPSGAPLPDTATPLLGNLTPSQFMRRHWQKKPLLIRQAIPGIVPPLSRDAL
FELAGDYDTESRLITHFRNRWQLAQGPFELDSLPSVSKREWTLLVQGVDLHDDAARALLERFRFIPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGRRRWRIGAQQDLTLREDLPLKVLARFEPTDEWVLEPGDMLYLPPHIAHDGIAEGECMTCS
IGFRAPSAGELTGQFLYYLAERGALRQGARAGELYRDPAQPPVDDPARLPAALVERVETILKGIRWTTRDVENFLGSYLS
EPKSNVVFDAPERPLGEAAFVAQASRRGIRLDRKAALLYNARSYFINGEENPLAGNAKWLPELADRRHLGAKRFVTYSRH
PLMTALLHEWYCAGWIRLGDLS

Sequences:

>Translated_422_residues
MRFSSKSPNYQPHYTMSQRSETEPTGAARAPSGAPLPDTATPLLGNLTPSQFMRRHWQKKPLLIRQAIPGIVPPLSRDAL
FELAGDYDTESRLITHFRNRWQLAQGPFELDSLPSVSKREWTLLVQGVDLHDDAARALLERFRFIPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGRRRWRIGAQQDLTLREDLPLKVLARFEPTDEWVLEPGDMLYLPPHIAHDGIAEGECMTCS
IGFRAPSAGELTGQFLYYLAERGALRQGARAGELYRDPAQPPVDDPARLPAALVERVETILKGIRWTTRDVENFLGSYLS
EPKSNVVFDAPERPLGEAAFVAQASRRGIRLDRKAALLYNARSYFINGEENPLAGNAKWLPELADRRHLGAKRFVTYSRH
PLMTALLHEWYCAGWIRLGDLS
>Mature_422_residues
MRFSSKSPNYQPHYTMSQRSETEPTGAARAPSGAPLPDTATPLLGNLTPSQFMRRHWQKKPLLIRQAIPGIVPPLSRDAL
FELAGDYDTESRLITHFRNRWQLAQGPFELDSLPSVSKREWTLLVQGVDLHDDAARALLERFRFIPDARLDDLMISYATD
GGGVGPHFDSYDVFLLQVHGRRRWRIGAQQDLTLREDLPLKVLARFEPTDEWVLEPGDMLYLPPHIAHDGIAEGECMTCS
IGFRAPSAGELTGQFLYYLAERGALRQGARAGELYRDPAQPPVDDPARLPAALVERVETILKGIRWTTRDVENFLGSYLS
EPKSNVVFDAPERPLGEAAFVAQASRRGIRLDRKAALLYNARSYFINGEENPLAGNAKWLPELADRRHLGAKRFVTYSRH
PLMTALLHEWYCAGWIRLGDLS

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=369, Percent_Identity=33.3333333333333, Blast_Score=197, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 47579; Mature: 47579

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSSKSPNYQPHYTMSQRSETEPTGAARAPSGAPLPDTATPLLGNLTPSQFMRRHWQKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCC
PLLIRQAIPGIVPPLSRDALFELAGDYDTESRLITHFRNRWQLAQGPFELDSLPSVSKRE
CCHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
WTLLVQGVDLHDDAARALLERFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHG
EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
RRRWRIGAQQDLTLREDLPLKVLARFEPTDEWVLEPGDMLYLPPHIAHDGIAEGECMTCS
CCEEECCCCCCCEECCCCCCEEEEECCCCCCCEECCCCEEEECCCCCCCCCCCCCEEEEE
IGFRAPSAGELTGQFLYYLAERGALRQGARAGELYRDPAQPPVDDPARLPAALVERVETI
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LKGIRWTTRDVENFLGSYLSEPKSNVVFDAPERPLGEAAFVAQASRRGIRLDRKAALLYN
HHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHEEEE
ARSYFINGEENPLAGNAKWLPELADRRHLGAKRFVTYSRHPLMTALLHEWYCAGWIRLGD
CEEEEECCCCCCCCCCCCCCHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHCEEEECC
LS
CC
>Mature Secondary Structure
MRFSSKSPNYQPHYTMSQRSETEPTGAARAPSGAPLPDTATPLLGNLTPSQFMRRHWQKK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCC
PLLIRQAIPGIVPPLSRDALFELAGDYDTESRLITHFRNRWQLAQGPFELDSLPSVSKRE
CCHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
WTLLVQGVDLHDDAARALLERFRFIPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHG
EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECC
RRRWRIGAQQDLTLREDLPLKVLARFEPTDEWVLEPGDMLYLPPHIAHDGIAEGECMTCS
CCEEECCCCCCCEECCCCCCEEEEECCCCCCCEECCCCEEEECCCCCCCCCCCCCEEEEE
IGFRAPSAGELTGQFLYYLAERGALRQGARAGELYRDPAQPPVDDPARLPAALVERVETI
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LKGIRWTTRDVENFLGSYLSEPKSNVVFDAPERPLGEAAFVAQASRRGIRLDRKAALLYN
HHHCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHEEEE
ARSYFINGEENPLAGNAKWLPELADRRHLGAKRFVTYSRHPLMTALLHEWYCAGWIRLGD
CEEEEECCCCCCCCCCCCCCHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHCEEEECC
LS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]