Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is cicA [H]

Identifier: 238027929

GI number: 238027929

Start: 2606176

End: 2606796

Strand: Reverse

Name: cicA [H]

Synonym: bglu_1g23740

Alternate gene names: 238027929

Gene position: 2606796-2606176 (Counterclockwise)

Preceding gene: 238027930

Following gene: 238027928

Centisome position: 66.73

GC content: 72.14

Gene sequence:

>621_bases
ATGACCGACCGCATCGTCGCCGCCTTCGATTTCGACGGCACCATCACCACCGCCGACAGCTTCCGCCATTTCGTGCGGCA
GGCGGTGGGCGCACGCCGTTTCGCCTGGGCGGGCTTGCGCGCGCTGCCGTGGATCGTCGCGATGAAGGCGGGCTGGATCT
CGCGCGGCGCGGCGAAGGCGAAATTCGCGTGGTTCGCGTTCGGGCCGATCGGCGAGCATGAACTCGACGCGCTCGCGACG
CGCTTCGCGGCTACCCGCCTGCCGCGTCTGGTGCGCCCCGAGATGCTGGCGCGGGTGCGCGAGCATCAGGCGCGCGGGCA
TGCGGTGGTGCTGGTCAGCGCGTCACCGTCGATCTACCTGGAAAAGTGGGCGGCGCCGCTCGGCTTCGAGGCGGTGCTGG
CCACGCGGCTCGGTTTCGAGCGCGGCCGGTTCACCGGCCGGCTCGACGGCGAGAACTGCTGGGGGCCGCAGAAGGTGGTG
CGGCTGAACGCGTGGTGGGGCGCGCAGCCCCCGGTCACGCTCTATGCCTACGGCGATAGCCGCGGCGATCGGGAGATGGC
CGAGCGCGCCGACCGGGCCTGGATTCGCGGCCAGGGGCCGATGGCCGCGATCGACGGCTGA

Upstream 100 bases:

>100_bases
TTGCGCTGGATTCCAGGCTCCGGGCCCGCGTGAATCGCGCGAGCCCGCGCAAATTTGCTATCTTGCGTGCTCGCCCGTTT
CCTTCCCGGCAGAGCTCGCC

Downstream 100 bases:

>100_bases
ACGGCGCCCTGGGCCGGCGCTGTCACGTGAGCGGATCACGGCCCTAGTTGCTATCATCGCCTCGACATTCAAGGGACGGC
CGTCTCAATGAGAGAAGACC

Product: HAD-superfamily subfamily IB hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALAT
RFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVV
RLNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG

Sequences:

>Translated_206_residues
MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALAT
RFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVV
RLNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG
>Mature_205_residues
TDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALATR
FAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVR
LNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG

Specific function: Unknown

COG id: COG0560

COG function: function code E; Phosphoserine phosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006383
- InterPro:   IPR006385 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 22881; Mature: 22750

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKA
CCCCEEEEEECCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
KFAWFAFGPIGEHELDALATRFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYL
EEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEH
EKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVRLNAWWGAQPPVTLYAYGDS
HHHCCCCCHHHHHHHHHCHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
RGDREMAERADRAWIRGQGPMAAIDG
CCHHHHHHHHHHCEECCCCCEEECCC
>Mature Secondary Structure 
TDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKA
CCCEEEEEECCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
KFAWFAFGPIGEHELDALATRFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYL
EEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEH
EKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVRLNAWWGAQPPVTLYAYGDS
HHHCCCCCHHHHHHHHHCHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCC
RGDREMAERADRAWIRGQGPMAAIDG
CCHHHHHHHHHHCEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11169108 [H]