| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is cicA [H]
Identifier: 238027929
GI number: 238027929
Start: 2606176
End: 2606796
Strand: Reverse
Name: cicA [H]
Synonym: bglu_1g23740
Alternate gene names: 238027929
Gene position: 2606796-2606176 (Counterclockwise)
Preceding gene: 238027930
Following gene: 238027928
Centisome position: 66.73
GC content: 72.14
Gene sequence:
>621_bases ATGACCGACCGCATCGTCGCCGCCTTCGATTTCGACGGCACCATCACCACCGCCGACAGCTTCCGCCATTTCGTGCGGCA GGCGGTGGGCGCACGCCGTTTCGCCTGGGCGGGCTTGCGCGCGCTGCCGTGGATCGTCGCGATGAAGGCGGGCTGGATCT CGCGCGGCGCGGCGAAGGCGAAATTCGCGTGGTTCGCGTTCGGGCCGATCGGCGAGCATGAACTCGACGCGCTCGCGACG CGCTTCGCGGCTACCCGCCTGCCGCGTCTGGTGCGCCCCGAGATGCTGGCGCGGGTGCGCGAGCATCAGGCGCGCGGGCA TGCGGTGGTGCTGGTCAGCGCGTCACCGTCGATCTACCTGGAAAAGTGGGCGGCGCCGCTCGGCTTCGAGGCGGTGCTGG CCACGCGGCTCGGTTTCGAGCGCGGCCGGTTCACCGGCCGGCTCGACGGCGAGAACTGCTGGGGGCCGCAGAAGGTGGTG CGGCTGAACGCGTGGTGGGGCGCGCAGCCCCCGGTCACGCTCTATGCCTACGGCGATAGCCGCGGCGATCGGGAGATGGC CGAGCGCGCCGACCGGGCCTGGATTCGCGGCCAGGGGCCGATGGCCGCGATCGACGGCTGA
Upstream 100 bases:
>100_bases TTGCGCTGGATTCCAGGCTCCGGGCCCGCGTGAATCGCGCGAGCCCGCGCAAATTTGCTATCTTGCGTGCTCGCCCGTTT CCTTCCCGGCAGAGCTCGCC
Downstream 100 bases:
>100_bases ACGGCGCCCTGGGCCGGCGCTGTCACGTGAGCGGATCACGGCCCTAGTTGCTATCATCGCCTCGACATTCAAGGGACGGC CGTCTCAATGAGAGAAGACC
Product: HAD-superfamily subfamily IB hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 205
Protein sequence:
>206_residues MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALAT RFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVV RLNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG
Sequences:
>Translated_206_residues MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALAT RFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVV RLNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG >Mature_205_residues TDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKAKFAWFAFGPIGEHELDALATR FAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYLEKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVR LNAWWGAQPPVTLYAYGDSRGDREMAERADRAWIRGQGPMAAIDG
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 22881; Mature: 22750
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKA CCCCEEEEEECCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCC KFAWFAFGPIGEHELDALATRFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYL EEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEH EKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVRLNAWWGAQPPVTLYAYGDS HHHCCCCCHHHHHHHHHCHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCC RGDREMAERADRAWIRGQGPMAAIDG CCHHHHHHHHHHCEECCCCCEEECCC >Mature Secondary Structure TDRIVAAFDFDGTITTADSFRHFVRQAVGARRFAWAGLRALPWIVAMKAGWISRGAAKA CCCEEEEEECCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCC KFAWFAFGPIGEHELDALATRFAATRLPRLVRPEMLARVREHQARGHAVVLVSASPSIYL EEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCEEEEEECCCCEEH EKWAAPLGFEAVLATRLGFERGRFTGRLDGENCWGPQKVVRLNAWWGAQPPVTLYAYGDS HHHCCCCCHHHHHHHHHCHHCCCEEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEECCC RGDREMAERADRAWIRGQGPMAAIDG CCHHHHHHHHHHCEECCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11169108 [H]