BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession	NC_012724
Length	3,906,507

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The map label for this gene is yahD [C]

Identifier: 238027833

GI number: 238027833

Start: 2468798

End: 2469409

Strand: Reverse

Name: yahD [C]

Synonym: bglu_1g22640

Alternate gene names: 238027833

Gene position: 2469409-2468798 (Counterclockwise)

Preceding gene: 238027834

Following gene: 238027831

Centisome position: 63.21

GC content: 68.3

Gene sequence:

>612_bases
ATGCCGTTCCGCAGGTTCTCATCCGCGCTCGTCAAGGCCGTGCTGCCCGCGCTGCTGGTTGCGCTCGGTGCCTGCGCCGC
GCCGGAATTGCACAAGCCCGCAGCGGGCGCGGCCGTGCAGGATATCCGCGACTACGACGAGGACTGGTTCGCCGCGGCGC
GACTCGGGCGCACGGATATTCTCGATGCGCTGCTGCAGGCGGGGTATCCGGTCGACGCGGTGACCTCGCGCGGCTACACG
GCGTTGATTCTTACCGCCTATGACGCGCAGCCTCAGGCGATGGCGTTTCTGCTCGCGCACGGCGCGAATGCCTGTGTCGG
CGACCGGAACGGCAATACCGCGCTGATGGGGGCGATTTTCAAGGGCGAACTCGATATCGCCCGGCGCTTGATGGAGACCG
GCTGTCCGATCGACCAGACGAATCACGCGGGGGAGACGGCACTGTCGTTCGCCGCGCTGTTCGGGCGGCTGGATTTGCTG
CCTGAACTGGTCAGGCGTGGGGCCGACCCGGACCACGCCGACGCGAGAGGCACGACCGCGCTGCGGCTCGCGCAGCAGCA
GGGCAATCGGGACGCCTATCATGCCTTGCTGACGGTGGGGGCGACGCGCTGA

Upstream 100 bases:

>100_bases
GCGGCCTGCCCGATGCTTGCGCGCGGGAGGGTGGCGCTTCGCGCGCCCGCGCCTCGCCGCCTTGAATCGATTCATTCGTC
TTTCGATGGAGCCTTATGTC

Downstream 100 bases:

>100_bases
CTGTCGTTTCGGCGCGCGCGGCGGCGCCGGCGGGGGGGATGAGGGCCGGGCGCTTGCGATCCAGGCGCTTGCCTTGCAGC
CCCCCGGTATCGGGGCCGCC

Product: Ankyrin repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MPFRRFSSALVKAVLPALLVALGACAAPELHKPAAGAAVQDIRDYDEDWFAAARLGRTDILDALLQAGYPVDAVTSRGYT
ALILTAYDAQPQAMAFLLAHGANACVGDRNGNTALMGAIFKGELDIARRLMETGCPIDQTNHAGETALSFAALFGRLDLL
PELVRRGADPDHADARGTTALRLAQQQGNRDAYHALLTVGATR

Sequences:

>Translated_203_residues
MPFRRFSSALVKAVLPALLVALGACAAPELHKPAAGAAVQDIRDYDEDWFAAARLGRTDILDALLQAGYPVDAVTSRGYT
ALILTAYDAQPQAMAFLLAHGANACVGDRNGNTALMGAIFKGELDIARRLMETGCPIDQTNHAGETALSFAALFGRLDLL
PELVRRGADPDHADARGTTALRLAQQQGNRDAYHALLTVGATR
>Mature_202_residues
PFRRFSSALVKAVLPALLVALGACAAPELHKPAAGAAVQDIRDYDEDWFAAARLGRTDILDALLQAGYPVDAVTSRGYTA
LILTAYDAQPQAMAFLLAHGANACVGDRNGNTALMGAIFKGELDIARRLMETGCPIDQTNHAGETALSFAALFGRLDLLP
ELVRRGADPDHADARGTTALRLAQQQGNRDAYHALLTVGATR

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI32967601, Length=150, Percent_Identity=35.3333333333333, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI268607595, Length=170, Percent_Identity=34.7058823529412, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI62988328, Length=170, Percent_Identity=34.7058823529412, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI157739945, Length=165, Percent_Identity=35.1515151515151, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI225543463, Length=152, Percent_Identity=35.5263157894737, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI225543461, Length=152, Percent_Identity=35.5263157894737, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI52426735, Length=150, Percent_Identity=32.6666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI52426737, Length=150, Percent_Identity=32.6666666666667, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI188595682, Length=150, Percent_Identity=32.6666666666667, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI55741641, Length=172, Percent_Identity=29.0697674418605, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI89363047, Length=189, Percent_Identity=30.6878306878307, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780357, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780353, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI215598574, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780359, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780355, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI30425444, Length=146, Percent_Identity=35.6164383561644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7657265, Length=150, Percent_Identity=30, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI70995267, Length=153, Percent_Identity=33.9869281045752, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI24233530, Length=133, Percent_Identity=30.8270676691729, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809478, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809476, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809474, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809472, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809470, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI224809468, Length=147, Percent_Identity=29.9319727891156, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI38683816, Length=152, Percent_Identity=34.2105263157895, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI38683807, Length=152, Percent_Identity=34.2105263157895, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI46519147, Length=152, Percent_Identity=33.5526315789474, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI37620163, Length=152, Percent_Identity=33.5526315789474, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI17864094, Length=142, Percent_Identity=30.2816901408451, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI46519154, Length=154, Percent_Identity=33.1168831168831, Blast_Score=64, Evalue=1e-10,
Organism=Homo sapiens, GI46519151, Length=154, Percent_Identity=33.1168831168831, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI115533596, Length=181, Percent_Identity=32.5966850828729, Blast_Score=73, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71981411, Length=150, Percent_Identity=32.6666666666667, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71981389, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71981414, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542700, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI25145251, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212646031, Length=159, Percent_Identity=30.8176100628931, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI212646033, Length=159, Percent_Identity=30.8176100628931, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI212646035, Length=159, Percent_Identity=30.8176100628931, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571867, Length=151, Percent_Identity=35.0993377483444, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571865, Length=151, Percent_Identity=35.0993377483444, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24583835, Length=142, Percent_Identity=34.5070422535211, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI161082096, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161082081, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161082110, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161082106, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161082085, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082099, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161078304, Length=160, Percent_Identity=31.875, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24650843, Length=146, Percent_Identity=28.7671232876712, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24663102, Length=140, Percent_Identity=36.4285714285714, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24663106, Length=140, Percent_Identity=36.4285714285714, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161082089, Length=159, Percent_Identity=30.8176100628931, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24663091, Length=140, Percent_Identity=36.4285714285714, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24663095, Length=140, Percent_Identity=36.4285714285714, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21357681, Length=140, Percent_Identity=36.4285714285714, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281359521, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281359519, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28558752, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28558750, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28558756, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28558754, Length=151, Percent_Identity=31.7880794701987, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 21541; Mature: 21410

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFRRFSSALVKAVLPALLVALGACAAPELHKPAAGAAVQDIRDYDEDWFAAARLGRTDI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHH
LDALLQAGYPVDAVTSRGYTALILTAYDAQPQAMAFLLAHGANACVGDRNGNTALMGAIF
HHHHHHCCCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCEEEEHHHH
KGELDIARRLMETGCPIDQTNHAGETALSFAALFGRLDLLPELVRRGADPDHADARGTTA
HCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LRLAQQQGNRDAYHALLTVGATR
HHHHHHCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
PFRRFSSALVKAVLPALLVALGACAAPELHKPAAGAAVQDIRDYDEDWFAAARLGRTDI
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHH
LDALLQAGYPVDAVTSRGYTALILTAYDAQPQAMAFLLAHGANACVGDRNGNTALMGAIF
HHHHHHCCCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCEEEEHHHH
KGELDIARRLMETGCPIDQTNHAGETALSFAALFGRLDLLPELVRRGADPDHADARGTTA
HCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LRLAQQQGNRDAYHALLTVGATR
HHHHHHCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]