| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is plcC [H]
Identifier: 238027802
GI number: 238027802
Start: 2428916
End: 2430538
Strand: Direct
Name: plcC [H]
Synonym: bglu_1g22280
Alternate gene names: 238027802
Gene position: 2428916-2430538 (Clockwise)
Preceding gene: 238027799
Following gene: 238027805
Centisome position: 62.18
GC content: 67.16
Gene sequence:
>1623_bases ATGAAGAAGACTTTTCACCGCGTGACGCCCATCGCGCTAGCCGCGGCGGCCTTCCTTGGCGGCTGCGGCGGCAACGACGA GGCCGCACCGGCTCAGCCGGCCGCCACCACGCCGACCCAGCCGGCCGCACAGAACCTGTCGGCCGTCAAGAACATCGTCG TGATCTACGCGGAAAACCGCAGCTTCGACAACCTCTACGGGACGTTTCCGGGTGCCAACGGCATCCAGAACGTGAGCGCC GCCAGCGCGCAGCAGCTCGATCGCGACGGCACGCCGCTCGCGACGCTGCCGAGGATCTGGGGCGGCCTGACCGCCTCCGG CGTGACGCCTGCCGTGACGGAGGCCGCTACGGCGAACCTGCCGAACGCACCGTTCGCGATCGACGATCCGAACGGCTTCA ACACCGGCATCAACGTGACGACGCGCGACCTGTATCACCGGTTCTACGAGAACCAGATGCAGATCAACGGCGGCAAGAAC AACATGTTCGCCGCGTGGGCGGATTCGGGCGGCCTCGTGATGGGCCACTACAACACCGACCAGACCAAGCTGCCGCTCTG GAAGATCGCGCAGCAGTACACGCTGGCCGACAACTTCTTCATGGGCGCGTTCGGCGGCTCGTTCCTGAACCACCAGTACC TGGTCTGCGCCTGCGCGCCGTTTTACCCGAACGCAGACACCAGCGTGGCGGCCGGCTCGATCTCGGCCGTGAACGCCGAC GGCGTGTCGCTGAAGGTGTCGAGCTCGTCGAAGGCTTCCGCGCTCGACGGCGCACCGGTGTTCGTGAATTCGGGCAACCT CACGCCCGATTTCTATGCGGTCAACACGATGCAGCCGCCGTACCAGCCGAGCGGCAACAAGGCGCCGGCCGGCGACGCGA CGCTGGCCGACCCGACCCTCGCCAACACGCTGCCGCCGCAGACGGCAACCAACATCGGCGACCTGCTCAGCAACGCCGGC GTATCGTGGGCATGGTATGCCGGCGCGTTCGGCGCGGCGCTGCAGAAGTCGCAGGGCGTCACGCCGGCCGCGGCGGCCGA CGGCACGACGCTCGCCACGGCGAACTTCCAGTACCACCACCAGCCGTTCAACTACTTCAAGAACCTCGCGCCGGGCACCA CGGCACGCGCGCAGCACGTGCTCGACGGCGGGCTCAACGGCAGCGAGTTCATCAAGGCGGTCGACGCGGGCACGCTGCCG GCGGTGTCGTTCTACAAGCCGCAGGGCAACCTGAACGAGCACGCCGGCTATGCCAACGTCGCGACGGGCGACCAGCACAT CGCCGACGTGATCACGCACCTGCAGAACAGCCCGCAGTGGAGCAACATGGTCGTCGTCGTGACCTATGACGAAAACGGCG GCTTCTGGGATCACGTCGCGCCGCCCAAGGGCGACCGCTGGGGCCCGGGCACGCGGATTCCGGCACTGATCATCTCGCCG TTCGCGAAGAAGGGCTTCGTCGATCACACGCAATACGACACCGCGTCGATCCTGCGCCTCATCACGCGCCGCTACTCGCT GCCGAAGCTCGACGGCCTGAAGCAGCGTGACGACGCGCTGGTGAAGAACGGCGGCACCGCGATGGGCGATCTGACCAACG CGCTGACGCTGTCGAGCAACTGA
Upstream 100 bases:
>100_bases GCCGTCAAAATTTCCTTACACAATTCGTTCGGCCTGCTGTCATTCGCCCTAAGCGTGATTGCCGGTTCCTACGGTACCTG TGCGACAAGAGAGACAACGA
Downstream 100 bases:
>100_bases GCCGGGCGCGATGCCGTCAGGCAGGAAGCAGCAGCAAGCGACCCGTTGGTAGCGGGCTCGAGTGATTGGGCGGCCTCGGC CGCCCTTTTTTATCGCGCGG
Product: phospholipase C
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 540; Mature: 540
Protein sequence:
>540_residues MKKTFHRVTPIALAAAAFLGGCGGNDEAAPAQPAATTPTQPAAQNLSAVKNIVVIYAENRSFDNLYGTFPGANGIQNVSA ASAQQLDRDGTPLATLPRIWGGLTASGVTPAVTEAATANLPNAPFAIDDPNGFNTGINVTTRDLYHRFYENQMQINGGKN NMFAAWADSGGLVMGHYNTDQTKLPLWKIAQQYTLADNFFMGAFGGSFLNHQYLVCACAPFYPNADTSVAAGSISAVNAD GVSLKVSSSSKASALDGAPVFVNSGNLTPDFYAVNTMQPPYQPSGNKAPAGDATLADPTLANTLPPQTATNIGDLLSNAG VSWAWYAGAFGAALQKSQGVTPAAAADGTTLATANFQYHHQPFNYFKNLAPGTTARAQHVLDGGLNGSEFIKAVDAGTLP AVSFYKPQGNLNEHAGYANVATGDQHIADVITHLQNSPQWSNMVVVVTYDENGGFWDHVAPPKGDRWGPGTRIPALIISP FAKKGFVDHTQYDTASILRLITRRYSLPKLDGLKQRDDALVKNGGTAMGDLTNALTLSSN
Sequences:
>Translated_540_residues MKKTFHRVTPIALAAAAFLGGCGGNDEAAPAQPAATTPTQPAAQNLSAVKNIVVIYAENRSFDNLYGTFPGANGIQNVSA ASAQQLDRDGTPLATLPRIWGGLTASGVTPAVTEAATANLPNAPFAIDDPNGFNTGINVTTRDLYHRFYENQMQINGGKN NMFAAWADSGGLVMGHYNTDQTKLPLWKIAQQYTLADNFFMGAFGGSFLNHQYLVCACAPFYPNADTSVAAGSISAVNAD GVSLKVSSSSKASALDGAPVFVNSGNLTPDFYAVNTMQPPYQPSGNKAPAGDATLADPTLANTLPPQTATNIGDLLSNAG VSWAWYAGAFGAALQKSQGVTPAAAADGTTLATANFQYHHQPFNYFKNLAPGTTARAQHVLDGGLNGSEFIKAVDAGTLP AVSFYKPQGNLNEHAGYANVATGDQHIADVITHLQNSPQWSNMVVVVTYDENGGFWDHVAPPKGDRWGPGTRIPALIISP FAKKGFVDHTQYDTASILRLITRRYSLPKLDGLKQRDDALVKNGGTAMGDLTNALTLSSN >Mature_540_residues MKKTFHRVTPIALAAAAFLGGCGGNDEAAPAQPAATTPTQPAAQNLSAVKNIVVIYAENRSFDNLYGTFPGANGIQNVSA ASAQQLDRDGTPLATLPRIWGGLTASGVTPAVTEAATANLPNAPFAIDDPNGFNTGINVTTRDLYHRFYENQMQINGGKN NMFAAWADSGGLVMGHYNTDQTKLPLWKIAQQYTLADNFFMGAFGGSFLNHQYLVCACAPFYPNADTSVAAGSISAVNAD GVSLKVSSSSKASALDGAPVFVNSGNLTPDFYAVNTMQPPYQPSGNKAPAGDATLADPTLANTLPPQTATNIGDLLSNAG VSWAWYAGAFGAALQKSQGVTPAAAADGTTLATANFQYHHQPFNYFKNLAPGTTARAQHVLDGGLNGSEFIKAVDAGTLP AVSFYKPQGNLNEHAGYANVATGDQHIADVITHLQNSPQWSNMVVVVTYDENGGFWDHVAPPKGDRWGPGTRIPALIISP FAKKGFVDHTQYDTASILRLITRRYSLPKLDGLKQRDDALVKNGGTAMGDLTNALTLSSN
Specific function: Unknown
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR006311 [H]
Pfam domain/function: PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 56815; Mature: 56815
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTFHRVTPIALAAAAFLGGCGGNDEAAPAQPAATTPTQPAAQNLSAVKNIVVIYAENR CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCC SFDNLYGTFPGANGIQNVSAASAQQLDRDGTPLATLPRIWGGLTASGVTPAVTEAATANL CCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCC PNAPFAIDDPNGFNTGINVTTRDLYHRFYENQMQINGGKNNMFAAWADSGGLVMGHYNTD CCCCEEEECCCCCCCCCCEEHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEEEEECCCC QTKLPLWKIAQQYTLADNFFMGAFGGSFLNHQYLVCACAPFYPNADTSVAAGSISAVNAD CCCCHHHHHHHHHHHHCCCEEHHHCCHHHCCCEEEEEECCCCCCCCCCEECCCEEEECCC GVSLKVSSSSKASALDGAPVFVNSGNLTPDFYAVNTMQPPYQPSGNKAPAGDATLADPTL CEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCH ANTLPPQTATNIGDLLSNAGVSWAWYAGAFGAALQKSQGVTPAAAADGTTLATANFQYHH HCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECC QPFNYFKNLAPGTTARAQHVLDGGLNGSEFIKAVDAGTLPAVSFYKPQGNLNEHAGYANV CHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCC ATGDQHIADVITHLQNSPQWSNMVVVVTYDENGGFWDHVAPPKGDRWGPGTRIPALIISP CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHEECH FAKKGFVDHTQYDTASILRLITRRYSLPKLDGLKQRDDALVKNGGTAMGDLTNALTLSSN HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCEEEECCC >Mature Secondary Structure MKKTFHRVTPIALAAAAFLGGCGGNDEAAPAQPAATTPTQPAAQNLSAVKNIVVIYAENR CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEEECCC SFDNLYGTFPGANGIQNVSAASAQQLDRDGTPLATLPRIWGGLTASGVTPAVTEAATANL CCCCCEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCC PNAPFAIDDPNGFNTGINVTTRDLYHRFYENQMQINGGKNNMFAAWADSGGLVMGHYNTD CCCCEEEECCCCCCCCCCEEHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEEEEECCCC QTKLPLWKIAQQYTLADNFFMGAFGGSFLNHQYLVCACAPFYPNADTSVAAGSISAVNAD CCCCHHHHHHHHHHHHCCCEEHHHCCHHHCCCEEEEEECCCCCCCCCCEECCCEEEECCC GVSLKVSSSSKASALDGAPVFVNSGNLTPDFYAVNTMQPPYQPSGNKAPAGDATLADPTL CEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCH ANTLPPQTATNIGDLLSNAGVSWAWYAGAFGAALQKSQGVTPAAAADGTTLATANFQYHH HCCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECC QPFNYFKNLAPGTTARAQHVLDGGLNGSEFIKAVDAGTLPAVSFYKPQGNLNEHAGYANV CHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCC ATGDQHIADVITHLQNSPQWSNMVVVVTYDENGGFWDHVAPPKGDRWGPGTRIPALIISP CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHEECH FAKKGFVDHTQYDTASILRLITRRYSLPKLDGLKQRDDALVKNGGTAMGDLTNALTLSSN HHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]