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The map label for this gene is xylR [H]

Identifier: 238027792

GI number: 238027792

Start: 2414772

End: 2415995

Strand: Direct

Name: xylR [H]

Synonym: bglu_1g22160

Alternate gene names: 238027792

Gene position: 2414772-2415995 (Clockwise)

Preceding gene: 238027785

Following gene: 238027793

Centisome position: 61.81

GC content: 70.59

Gene sequence:

>1224_bases
ATGCAACGCCCGTCCGCCGATCCGCCGCCGCCCGCGCGCGCGCATCGCATCGCGCTGCTGTTCAATGCCAACAAGGTGTA
CGACCGCGAGGTGATCGCCGGCATCGGCGACTACATGCGCTCGACGCGCGTGACCTGGGATCTGTTCCTCGAGGACGATT
TCCGCTGCCGGCTGGCCGGCATCGAGCGCTTCGACGGCGACGGCATCATCGCCGACTTCGACGATCCGGCCGTGGACGCG
GCGCTGCGCGGCTGCCGGCTGCCGGTGGTGGCGGTCGGCTCGTCCTACGAGGACGCGGCGCACTATCCGGCCGGCCTGCC
CTACGTGGCGACCGACAACGGCAAGCTGATCGCGCTGGCCTACACGCACCTGATCGAGGCCGGGCTCGAGCACTTCGCGC
TCTACAGCCTGCCGCCCGCCGACGAGAACCGCTGGGCGCAGCAGCGCGAGCGCGTCTACACGCGCCTGCGCCGCCACGAT
GCGCCGGCGCTGCCGATCGAGCGCGAGATCTACCGCGGGCTGTCCACCAGCGCGCCCACCTGGCACCAGTCCACGCAGCA
GCTGATCGACTGGCTGCGCGCGCTGCCCAAGCCGGTGGGCGTGATCGCCGTGACCGACGCGCGCGCGCGGCACCTGCTGC
AGGCCTGCGTGTCGGCCGGGCTCGCGGTGCCCGAGGAGATCGCCATCATCGGCATCGACAACGATCCGCTCACGCGCACG
CTGTCGCGCATTCCGCTCTCGTCGGTGATCCAGGGCACCGAGGAAATGGGCCGCACCGCCGCCCACCTGCTGCATCAGAT
GCTCGGCGGGGCGCGCTTCGCGGGGCGCCAGATCCTGGTGCCGCCGGTGGGCATCAACGTGCTGGCCTCCACGCGCCACC
AGCCGCTCGCGAGCCCCTACGTGATGCGCGCACGGCACTTCATCCGCCAGTATGCGTGCCAGGGCATCCGCACCGAGCAG
GTGGCCGACTACGTGGGCATGTCGCGCTCGTCGCTCGAGGAGCATTTCCGCCGCGAGCTGCGCTGCACCGTGCATCAGGA
AATCCTGCGCCACAAGCTCGATGCGGCCAAGCAGCTGCTCAGGCAGCGCGAGCTGGCCACCGCCGAGGTGGCGGTGCGCT
GCGGCTTCACCTCGACGCAATACATGTACGCGGTGTTCCGGCGCGAGCTCGACTGCACGCCGCGCGAATACCAGGAACGC
ACGCTGTCCGGAGGCCATGCTTGA

Upstream 100 bases:

>100_bases
GACAGCCACTAGAATGATCGGACCGCGACACCCGGGCCGCCCTGGCGCCCGTGATTTCGTTATGCGAGCCGCCGCCTTTG
CCTCGCAAGGAGACCCGCTC

Downstream 100 bases:

>100_bases
GCGCAATCCCATCGACGCCGGCCTTCGGGCCGGCCGGTCAGCGTGTCTCGTCGCGGCCGTGGGGCCGCCTGCCCGGCGGC
GACCCGGTGCGCCTCTTCAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQRPSADPPPPARAHRIALLFNANKVYDREVIAGIGDYMRSTRVTWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVDA
ALRGCRLPVVAVGSSYEDAAHYPAGLPYVATDNGKLIALAYTHLIEAGLEHFALYSLPPADENRWAQQRERVYTRLRRHD
APALPIEREIYRGLSTSAPTWHQSTQQLIDWLRALPKPVGVIAVTDARARHLLQACVSAGLAVPEEIAIIGIDNDPLTRT
LSRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFAGRQILVPPVGINVLASTRHQPLASPYVMRARHFIRQYACQGIRTEQ
VADYVGMSRSSLEEHFRRELRCTVHQEILRHKLDAAKQLLRQRELATAEVAVRCGFTSTQYMYAVFRRELDCTPREYQER
TLSGGHA

Sequences:

>Translated_407_residues
MQRPSADPPPPARAHRIALLFNANKVYDREVIAGIGDYMRSTRVTWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVDA
ALRGCRLPVVAVGSSYEDAAHYPAGLPYVATDNGKLIALAYTHLIEAGLEHFALYSLPPADENRWAQQRERVYTRLRRHD
APALPIEREIYRGLSTSAPTWHQSTQQLIDWLRALPKPVGVIAVTDARARHLLQACVSAGLAVPEEIAIIGIDNDPLTRT
LSRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFAGRQILVPPVGINVLASTRHQPLASPYVMRARHFIRQYACQGIRTEQ
VADYVGMSRSSLEEHFRRELRCTVHQEILRHKLDAAKQLLRQRELATAEVAVRCGFTSTQYMYAVFRRELDCTPREYQER
TLSGGHA
>Mature_407_residues
MQRPSADPPPPARAHRIALLFNANKVYDREVIAGIGDYMRSTRVTWDLFLEDDFRCRLAGIERFDGDGIIADFDDPAVDA
ALRGCRLPVVAVGSSYEDAAHYPAGLPYVATDNGKLIALAYTHLIEAGLEHFALYSLPPADENRWAQQRERVYTRLRRHD
APALPIEREIYRGLSTSAPTWHQSTQQLIDWLRALPKPVGVIAVTDARARHLLQACVSAGLAVPEEIAIIGIDNDPLTRT
LSRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFAGRQILVPPVGINVLASTRHQPLASPYVMRARHFIRQYACQGIRTEQ
VADYVGMSRSSLEEHFRRELRCTVHQEILRHKLDAAKQLLRQRELATAEVAVRCGFTSTQYMYAVFRRELDCTPREYQER
TLSGGHA

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=387, Percent_Identity=45.2196382428941, Blast_Score=360, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45644; Mature: 45644

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRPSADPPPPARAHRIALLFNANKVYDREVIAGIGDYMRSTRVTWDLFLEDDFRCRLAG
CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEC
IERFDGDGIIADFDDPAVDAALRGCRLPVVAVGSSYEDAAHYPAGLPYVATDNGKLIALA
CEEECCCCEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCEEEECCCCEEEHH
YTHLIEAGLEHFALYSLPPADENRWAQQRERVYTRLRRHDAPALPIEREIYRGLSTSAPT
HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCC
WHQSTQQLIDWLRALPKPVGVIAVTDARARHLLQACVSAGLAVPEEIAIIGIDNDPLTRT
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH
LSRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFAGRQILVPPVGINVLASTRHQPLASPY
HHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCCCHHHHCCCCCCCCCHH
VMRARHFIRQYACQGIRTEQVADYVGMSRSSLEEHFRRELRCTVHQEILRHKLDAAKQLL
HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRELATAEVAVRCGFTSTQYMYAVFRRELDCTPREYQERTLSGGHA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MQRPSADPPPPARAHRIALLFNANKVYDREVIAGIGDYMRSTRVTWDLFLEDDFRCRLAG
CCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEC
IERFDGDGIIADFDDPAVDAALRGCRLPVVAVGSSYEDAAHYPAGLPYVATDNGKLIALA
CEEECCCCEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCEEEECCCCEEEHH
YTHLIEAGLEHFALYSLPPADENRWAQQRERVYTRLRRHDAPALPIEREIYRGLSTSAPT
HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCC
WHQSTQQLIDWLRALPKPVGVIAVTDARARHLLQACVSAGLAVPEEIAIIGIDNDPLTRT
HHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH
LSRIPLSSVIQGTEEMGRTAAHLLHQMLGGARFAGRQILVPPVGINVLASTRHQPLASPY
HHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCCCHHHHCCCCCCCCCHH
VMRARHFIRQYACQGIRTEQVADYVGMSRSSLEEHFRRELRCTVHQEILRHKLDAAKQLL
HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQRELATAEVAVRCGFTSTQYMYAVFRRELDCTPREYQERTLSGGHA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]