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The map label for this gene is yjiR [H]

Identifier: 238027721

GI number: 238027721

Start: 2328671

End: 2330113

Strand: Direct

Name: yjiR [H]

Synonym: bglu_1g21420

Alternate gene names: 238027721

Gene position: 2328671-2330113 (Clockwise)

Preceding gene: 238027711

Following gene: 238027723

Centisome position: 59.61

GC content: 65.84

Gene sequence:

>1443_bases
ATGCACACGAAATATCGTCTGCTCGCGGAGCACTATGCGAAGGCCATCGAAAACGGGTTTCTCGCGGAAGGGGAGCGACT
GCCGTCCTTGAGGGAATTGATGGCGCTGCATCACGTGTCGATTTCCACGGCGGTGGAGGCGTGTCGTGTGCTCGAGATGC
AGGGTTATGTGGAAGCGAAGCCGCGAGCCGGCTATTTCGTCCGCTCGCGCAAGCCGATCAAGACGGCGGTTCCGGCCCAG
CAGGAAAGCCGCATGGAAACGCCCGCCGAGCGCATCGATCCGGCCGATTACGTGGGCGTTCACGAGCGCATTTCGGTCAC
GCTGGCGCGCGGCCAGCAGCGACAGCCGAAGATCGATCTGGCGGGGGCCGTGTGCGCCCCCGCCCTCTATCCTGGCGCGG
CGCTGCGCGATACCATGCTGCGCATCCTGCGCGCACGGCCGAGCCTTTACGATGCCGGCCCCGAGACCGACGGCGTGCGC
AAGCTGCGCGAGTCGATCGCCCGGACCTCGCTCACGCGCGGCCTGCACATCGATGCGGACACGGTGCTCGTCACGCACGG
CTGCAGCGAGGCGCTGTCGCTCGCGCTGCGCGCCGTCACCGGGCCGGGCGACATCGTCGCGATCGAGTCGCCCTGCTATT
TCGGCATCTTGCAGATCATCGAGTCACTCGGGCTGCGGGCCATCGAGATCCCCACCGACCCGCAGACCGGCATCTCGGTC
AGCGCGCTCGAGTTCGCCATCAACCACATGGGCAGCATCCACGCCGTGGTCTGCATGCCGTCGGTGCAGAATCCGCTCGG
CAGCGTGATGTCCGACGCGGCCAAGCAACGGATGGTGGCGCTCTGCGAGAAGCACCACGTGGCCATCATCGAGGACGACA
CCTACGGCGCGTTCCTGCCCAGCCCGGCCAGCACGCGGCCGATCAAGGCCTGGGACCAGAGCGGCAACGTCATCTACTGC
AATTCGTTCAACAAGTCGCTATCGCCCGGCTTGCGGGTGGGCTGGCTGATCGGGGGGAAGTGGCAGAACCGGATCAAGAT
GCTGATGTACGCGGTATCGCGCCATCGCGAGGAAATGTCCCAGCTGGTGGTGGCCGACTTCACGTCCGGCGGCACCTTCA
ACCGGCATATGCGGCGCATGAACCGGCTGCTCAAGGATCAGCGCGCGCAGGTCGTCGATGCGGTGCTGCGCTATTTCCCG
GCCGGCACCGCCGTGACGCAGCCGGGCGCCGGCCTGCTGCTGTGGGTCACGCTGCCCGACGAACTGAACACCGACCGGCT
GTTCGACAAGGCGCTCGACAAGGGGATCCGCATCTGCCCGGGTTCGATCTTCTCGAACACGAACAAGTTCAGCAACTGCC
TGCGGCTCAGCGCGGGCATGCCGTTCGACGCGAAAATCGACACGGCCCTGAAGACGCTCGCGCAACTGAGCACCGAGATC
TGA

Upstream 100 bases:

>100_bases
ACGCACAAAAATATGAAAAATTCATCGGCTTAGTTGCCGATTTTGCACCCCTGTACTGGTATAATTTTCCGGATCTATAC
CGGTCTTTAGTACAAGAAAA

Downstream 100 bases:

>100_bases
GGCCGGCGCCGGCGCGGGCCGCCATCGATCAGGTCCTGCGTGCGCCGTATCCGCTGCGTCAAAACTGACGAAAGAAACTC
GCGGCAAAACTGAATGCCTG

Product: GntR family transcriptional regulator / aminotransferase class-I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MHTKYRLLAEHYAKAIENGFLAEGERLPSLRELMALHHVSISTAVEACRVLEMQGYVEAKPRAGYFVRSRKPIKTAVPAQ
QESRMETPAERIDPADYVGVHERISVTLARGQQRQPKIDLAGAVCAPALYPGAALRDTMLRILRARPSLYDAGPETDGVR
KLRESIARTSLTRGLHIDADTVLVTHGCSEALSLALRAVTGPGDIVAIESPCYFGILQIIESLGLRAIEIPTDPQTGISV
SALEFAINHMGSIHAVVCMPSVQNPLGSVMSDAAKQRMVALCEKHHVAIIEDDTYGAFLPSPASTRPIKAWDQSGNVIYC
NSFNKSLSPGLRVGWLIGGKWQNRIKMLMYAVSRHREEMSQLVVADFTSGGTFNRHMRRMNRLLKDQRAQVVDAVLRYFP
AGTAVTQPGAGLLLWVTLPDELNTDRLFDKALDKGIRICPGSIFSNTNKFSNCLRLSAGMPFDAKIDTALKTLAQLSTEI

Sequences:

>Translated_480_residues
MHTKYRLLAEHYAKAIENGFLAEGERLPSLRELMALHHVSISTAVEACRVLEMQGYVEAKPRAGYFVRSRKPIKTAVPAQ
QESRMETPAERIDPADYVGVHERISVTLARGQQRQPKIDLAGAVCAPALYPGAALRDTMLRILRARPSLYDAGPETDGVR
KLRESIARTSLTRGLHIDADTVLVTHGCSEALSLALRAVTGPGDIVAIESPCYFGILQIIESLGLRAIEIPTDPQTGISV
SALEFAINHMGSIHAVVCMPSVQNPLGSVMSDAAKQRMVALCEKHHVAIIEDDTYGAFLPSPASTRPIKAWDQSGNVIYC
NSFNKSLSPGLRVGWLIGGKWQNRIKMLMYAVSRHREEMSQLVVADFTSGGTFNRHMRRMNRLLKDQRAQVVDAVLRYFP
AGTAVTQPGAGLLLWVTLPDELNTDRLFDKALDKGIRICPGSIFSNTNKFSNCLRLSAGMPFDAKIDTALKTLAQLSTEI
>Mature_480_residues
MHTKYRLLAEHYAKAIENGFLAEGERLPSLRELMALHHVSISTAVEACRVLEMQGYVEAKPRAGYFVRSRKPIKTAVPAQ
QESRMETPAERIDPADYVGVHERISVTLARGQQRQPKIDLAGAVCAPALYPGAALRDTMLRILRARPSLYDAGPETDGVR
KLRESIARTSLTRGLHIDADTVLVTHGCSEALSLALRAVTGPGDIVAIESPCYFGILQIIESLGLRAIEIPTDPQTGISV
SALEFAINHMGSIHAVVCMPSVQNPLGSVMSDAAKQRMVALCEKHHVAIIEDDTYGAFLPSPASTRPIKAWDQSGNVIYC
NSFNKSLSPGLRVGWLIGGKWQNRIKMLMYAVSRHREEMSQLVVADFTSGGTFNRHMRRMNRLLKDQRAQVVDAVLRYFP
AGTAVTQPGAGLLLWVTLPDELNTDRLFDKALDKGIRICPGSIFSNTNKFSNCLRLSAGMPFDAKIDTALKTLAQLSTEI

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=313, Percent_Identity=26.8370607028754, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI33469970, Length=313, Percent_Identity=26.8370607028754, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI4507369, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=2e-12,
Organism=Escherichia coli, GI1790797, Length=474, Percent_Identity=36.2869198312236, Blast_Score=316, Evalue=2e-87,
Organism=Escherichia coli, GI1787710, Length=480, Percent_Identity=32.9166666666667, Blast_Score=272, Evalue=4e-74,
Organism=Escherichia coli, GI48994949, Length=242, Percent_Identity=23.1404958677686, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=336, Percent_Identity=25, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321000, Length=228, Percent_Identity=24.5614035087719, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI18859735, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52712; Mature: 52712

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTKYRLLAEHYAKAIENGFLAEGERLPSLRELMALHHVSISTAVEACRVLEMQGYVEAK
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
PRAGYFVRSRKPIKTAVPAQQESRMETPAERIDPADYVGVHERISVTLARGQQRQPKIDL
CCCCEEEECCCCCHHCCCCHHHHHCCCCHHHCCCCHHCCHHHHHEEEEECCCCCCCCCCH
AGAVCAPALYPGAALRDTMLRILRARPSLYDAGPETDGVRKLRESIARTSLTRGLHIDAD
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCC
TVLVTHGCSEALSLALRAVTGPGDIVAIESPCYFGILQIIESLGLRAIEIPTDPQTGISV
EEEEECCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCH
SALEFAINHMGSIHAVVCMPSVQNPLGSVMSDAAKQRMVALCEKHHVAIIEDDTYGAFLP
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
SPASTRPIKAWDQSGNVIYCNSFNKSLSPGLRVGWLIGGKWQNRIKMLMYAVSRHREEMS
CCCCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
QLVVADFTSGGTFNRHMRRMNRLLKDQRAQVVDAVLRYFPAGTAVTQPGAGLLLWVTLPD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
ELNTDRLFDKALDKGIRICPGSIFSNTNKFSNCLRLSAGMPFDAKIDTALKTLAQLSTEI
CCCHHHHHHHHHHCCCEECCCHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHTKYRLLAEHYAKAIENGFLAEGERLPSLRELMALHHVSISTAVEACRVLEMQGYVEAK
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
PRAGYFVRSRKPIKTAVPAQQESRMETPAERIDPADYVGVHERISVTLARGQQRQPKIDL
CCCCEEEECCCCCHHCCCCHHHHHCCCCHHHCCCCHHCCHHHHHEEEEECCCCCCCCCCH
AGAVCAPALYPGAALRDTMLRILRARPSLYDAGPETDGVRKLRESIARTSLTRGLHIDAD
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCC
TVLVTHGCSEALSLALRAVTGPGDIVAIESPCYFGILQIIESLGLRAIEIPTDPQTGISV
EEEEECCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCH
SALEFAINHMGSIHAVVCMPSVQNPLGSVMSDAAKQRMVALCEKHHVAIIEDDTYGAFLP
HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
SPASTRPIKAWDQSGNVIYCNSFNKSLSPGLRVGWLIGGKWQNRIKMLMYAVSRHREEMS
CCCCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
QLVVADFTSGGTFNRHMRRMNRLLKDQRAQVVDAVLRYFPAGTAVTQPGAGLLLWVTLPD
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCC
ELNTDRLFDKALDKGIRICPGSIFSNTNKFSNCLRLSAGMPFDAKIDTALKTLAQLSTEI
CCCHHHHHHHHHHCCCEECCCHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]