Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238027682

Identifier: 238027682

GI number: 238027682

Start: 2293067

End: 2294536

Strand: Direct

Name: 238027682

Synonym: bglu_1g21030

Alternate gene names: NA

Gene position: 2293067-2294536 (Clockwise)

Preceding gene: 238027681

Following gene: 238027683

Centisome position: 58.7

GC content: 62.18

Gene sequence:

>1470_bases
ATGAGCCGACGCCGGATCTCGCGCGGCGCCATTGATCGCGTCGAGCGCTACTTCAAGGGCATCGCCACGAAGGCCGAGCC
GGCCGTGTTCGGCATTTGCAACATGCAGCGCGAGGTCATCAAGCGCGTCGACGTGGCCGGCCGCGAGACGGATGCAGAGC
CGACGGTGCTGATCCCGCAGAAGCTCGAGAGGCTGATCTACCCGAAGCGCCTCAAGATCGTCTGGGGCGGCCGCGGCTCT
GCGAAGACGCGCACTATCGTCTCGATCCTGACCGCCCAAGCGTCGACGCAGCGCGAGCGCATCCTTTGTCTGCGCGAGGT
GCAGAATTCGATCGAGGAGTCGAGCCACGCCGAGCTCGCCGAGGAGATCGAGCGGCGCGACCTGGGCGGCTCATTCGTCG
TCGGCCGCAAGGTCATCCGCGTGCCGGCCACCCGCAGCAGCTTTTCCTTTCGCGGCCTCTACCGCAACGTCACCGGTGTG
AAAGGCTTTGCGAAAGCAACGAAGGCATGGGTGGACGAGGCCGAGAACGTGTCTCGCGAATCCTGGGACGTGCTGCTGCC
GACCATCCGCGAGCCGGGCTCCGAGATCATCGTCTCGTTCAACCCGAACCGCGAGAACGACCCGACCTGGGCTGATCTCG
TTGGCCCCTACGTCGATCGCCTCGACGAGGACGGCTGCTACGAGGACGCCGACACTCTCATCATCCGCGCCAACTACACC
GACAACCCCTGGTTCACGGAGGAGCTGGAACTGGAGCGCGCCAAGATGGAGCGCACCGACCTCGACCGCTACCGGTGGAT
CTGGCTGGGTAAGTTCAACCGCCGCTCCGACGAGCTCATCTTCGCCGGGAAGTGGCGCGTCGAGGACATTGAGGCCCCGC
CGAACACGCGGTTCTTCTTCGGTGCCGACTGGGGGTTCGCCGTCGACCCGACCACGCTCAATCGCTGCTGGGTGCGCGGC
AACGACCTGATCATCGACTACGAGGCCCACGGCAAGCAGGTCGACCTTGACGAGATCTGGAAGCTGTTTGCTGGCCGAGA
AGGAATGCGGCCCGAGCAGATCAAGCAGTGGAAGCCCGTTGACGAGTTCAAGTACCCCGGCATCCCTGGCGCCCGGAAGT
GGAAGATCAAAGCCGACTGCGCGCGGCCCGAGACGATCTCCCACGTCGCCAAGCAGGGCTTCAACATCGACGCGGCGAAG
AAATGGGGCGGCTCCGTAGAAGATGGAATCGCATTTTTACGTGGTTTTGACGCGATTATCATCCATTCACGGTGCGTTAA
AACAAAAGAGGAATTCGAGAATTATTCGTACAAAGTCGACAAAGCCACCGGAGACGTGTTGCCTATAATCGTCGACAAGT
GGAATCACCATATCGACGGCATCCGTTACTCGATGGACGGCTATATCAGGGGCCGCGGAACGGGCCTGAACATCTCGCCG
GATGCACTGCGCGCATTGATGACCGCTTAA

Upstream 100 bases:

>100_bases
AGCAGCTCGTCAACATGATCCGGGCCAAGCTCGACGTGCTCGAAATCAGCGAGCTCGCCGACCGCCTGGCCGCGATCGAG
AAACAGCTCGCCGAGGGGCA

Downstream 100 bases:

>100_bases
ATCCGATTATTCACGGCTTAAAGGCCAATTTCCCGGAGTTTCAGAAATGACACGGTCCATTCTGCGCGTTCTGCTCGGCG
CCGCGTTCGCGCCGCTTGCC

Product: phage terminase large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MSRRRISRGAIDRVERYFKGIATKAEPAVFGICNMQREVIKRVDVAGRETDAEPTVLIPQKLERLIYPKRLKIVWGGRGS
AKTRTIVSILTAQASTQRERILCLREVQNSIEESSHAELAEEIERRDLGGSFVVGRKVIRVPATRSSFSFRGLYRNVTGV
KGFAKATKAWVDEAENVSRESWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYEDADTLIIRANYT
DNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVEDIEAPPNTRFFFGADWGFAVDPTTLNRCWVRG
NDLIIDYEAHGKQVDLDEIWKLFAGREGMRPEQIKQWKPVDEFKYPGIPGARKWKIKADCARPETISHVAKQGFNIDAAK
KWGGSVEDGIAFLRGFDAIIIHSRCVKTKEEFENYSYKVDKATGDVLPIIVDKWNHHIDGIRYSMDGYIRGRGTGLNISP
DALRALMTA

Sequences:

>Translated_489_residues
MSRRRISRGAIDRVERYFKGIATKAEPAVFGICNMQREVIKRVDVAGRETDAEPTVLIPQKLERLIYPKRLKIVWGGRGS
AKTRTIVSILTAQASTQRERILCLREVQNSIEESSHAELAEEIERRDLGGSFVVGRKVIRVPATRSSFSFRGLYRNVTGV
KGFAKATKAWVDEAENVSRESWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYEDADTLIIRANYT
DNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVEDIEAPPNTRFFFGADWGFAVDPTTLNRCWVRG
NDLIIDYEAHGKQVDLDEIWKLFAGREGMRPEQIKQWKPVDEFKYPGIPGARKWKIKADCARPETISHVAKQGFNIDAAK
KWGGSVEDGIAFLRGFDAIIIHSRCVKTKEEFENYSYKVDKATGDVLPIIVDKWNHHIDGIRYSMDGYIRGRGTGLNISP
DALRALMTA
>Mature_488_residues
SRRRISRGAIDRVERYFKGIATKAEPAVFGICNMQREVIKRVDVAGRETDAEPTVLIPQKLERLIYPKRLKIVWGGRGSA
KTRTIVSILTAQASTQRERILCLREVQNSIEESSHAELAEEIERRDLGGSFVVGRKVIRVPATRSSFSFRGLYRNVTGVK
GFAKATKAWVDEAENVSRESWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYEDADTLIIRANYTD
NPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVEDIEAPPNTRFFFGADWGFAVDPTTLNRCWVRGN
DLIIDYEAHGKQVDLDEIWKLFAGREGMRPEQIKQWKPVDEFKYPGIPGARKWKIKADCARPETISHVAKQGFNIDAAKK
WGGSVEDGIAFLRGFDAIIIHSRCVKTKEEFENYSYKVDKATGDVLPIIVDKWNHHIDGIRYSMDGYIRGRGTGLNISPD
ALRALMTA

Specific function: Unknown

COG id: COG1783

COG function: function code R; Phage terminase large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006701
- InterPro:   IPR006437 [H]

Pfam domain/function: PF04466 Terminase_3 [H]

EC number: NA

Molecular weight: Translated: 55994; Mature: 55863

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRRISRGAIDRVERYFKGIATKAEPAVFGICNMQREVIKRVDVAGRETDAEPTVLIPQ
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEECHH
KLERLIYPKRLKIVWGGRGSAKTRTIVSILTAQASTQRERILCLREVQNSIEESSHAELA
HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIERRDLGGSFVVGRKVIRVPATRSSFSFRGLYRNVTGVKGFAKATKAWVDEAENVSRE
HHHHHHCCCCCEEECCEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
SWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYEDADTLIIRANYT
CHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
DNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVEDIEAPPNTRFFF
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECEEEEECCCCCCCEEEE
GADWGFAVDPTTLNRCWVRGNDLIIDYEAHGKQVDLDEIWKLFAGREGMRPEQIKQWKPV
ECCCCCEECCCCCCEEEEECCCEEEEEECCCCEECHHHHHHHHCCCCCCCHHHHHHCCCH
DEFKYPGIPGARKWKIKADCARPETISHVAKQGFNIDAAKKWGGSVEDGIAFLRGFDAII
HHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCEEE
IHSRCVKTKEEFENYSYKVDKATGDVLPIIVDKWNHHIDGIRYSMDGYIRGRGTGLNISP
EHHHHHHCHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCEEEECCCEEEECCCCCCCCH
DALRALMTA
HHHHHHHCC
>Mature Secondary Structure 
SRRRISRGAIDRVERYFKGIATKAEPAVFGICNMQREVIKRVDVAGRETDAEPTVLIPQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCEEECHH
KLERLIYPKRLKIVWGGRGSAKTRTIVSILTAQASTQRERILCLREVQNSIEESSHAELA
HHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIERRDLGGSFVVGRKVIRVPATRSSFSFRGLYRNVTGVKGFAKATKAWVDEAENVSRE
HHHHHHCCCCCEEECCEEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
SWDVLLPTIREPGSEIIVSFNPNRENDPTWADLVGPYVDRLDEDGCYEDADTLIIRANYT
CHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
DNPWFTEELELERAKMERTDLDRYRWIWLGKFNRRSDELIFAGKWRVEDIEAPPNTRFFF
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECEEEEECCCCCCCEEEE
GADWGFAVDPTTLNRCWVRGNDLIIDYEAHGKQVDLDEIWKLFAGREGMRPEQIKQWKPV
ECCCCCEECCCCCCEEEEECCCEEEEEECCCCEECHHHHHHHHCCCCCCCHHHHHHCCCH
DEFKYPGIPGARKWKIKADCARPETISHVAKQGFNIDAAKKWGGSVEDGIAFLRGFDAII
HHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCEEE
IHSRCVKTKEEFENYSYKVDKATGDVLPIIVDKWNHHIDGIRYSMDGYIRGRGTGLNISP
EHHHHHHCHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCEEEECCCEEEECCCCCCCCH
DALRALMTA
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]