Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is ydaS [C]

Identifier: 238027674

GI number: 238027674

Start: 2285793

End: 2286074

Strand: Direct

Name: ydaS [C]

Synonym: bglu_1g20950

Alternate gene names: 238027674

Gene position: 2285793-2286074 (Clockwise)

Preceding gene: 238027661

Following gene: 238027675

Centisome position: 58.51

GC content: 66.67

Gene sequence:

>282_bases
ATGGACGCAGAAGTCCACAACGACGAGCGCCAAGCCGAACTCAAGGACGCCGTGAAACAGGCCGGCGGCGCGTCCGCGCT
TGCCGAGCATCTCGGCCTCTCGCGCGGCGCCATCTACGACTTCATCCGTCGCGGCAACTTCAACCCCGAGCACTGCCCGG
AGATCGAGAAGTTCTCGCAGGGCAAGGTGAGGTGCGAGGTGCTAAACAACCGCGTCGACTGGGCCTTCATTCGCGCCGCC
GACGCCGCCAAGGCCGACGCCGCGGCAGGGGTGGGCGTATGA

Upstream 100 bases:

>100_bases
TCGAACCAATATCCATAGTGCAGTAAAACTTAACACTTGCTTGTGTAGTGTTGCTTCGCCTATCATGTGTAGCAACCCTT
CACATACGAGGTGAAATGCC

Downstream 100 bases:

>100_bases
GCGGCGTCCACTTCCTGTCTCGCGAAGAAGCAGCACGGATCCATGATCGGTGCCGCCCGCCCGAATACGTTCAGGTCCGC
AGCATCACTGCTTCGTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MDAEVHNDERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNPEHCPEIEKFSQGKVRCEVLNNRVDWAFIRAA
DAAKADAAAGVGV

Sequences:

>Translated_93_residues
MDAEVHNDERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNPEHCPEIEKFSQGKVRCEVLNNRVDWAFIRAA
DAAKADAAAGVGV
>Mature_93_residues
MDAEVHNDERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNPEHCPEIEKFSQGKVRCEVLNNRVDWAFIRAA
DAAKADAAAGVGV

Specific function: Unknown

COG id: COG4197

COG function: function code S; Uncharacterized protein conserved in bacteria, prophage-related

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10065; Mature: 10065

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAEVHNDERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNPEHCPEIEKFSQ
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHCC
GKVRCEVLNNRVDWAFIRAADAAKADAAAGVGV
CCEEHHHHCCCCCCHHEECCCCHHHHCCCCCCC
>Mature Secondary Structure
MDAEVHNDERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNPEHCPEIEKFSQ
CCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHCC
GKVRCEVLNNRVDWAFIRAADAAKADAAAGVGV
CCEEHHHHCCCCCCHHEECCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA