| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is mdtP [H]
Identifier: 238027579
GI number: 238027579
Start: 2186450
End: 2187979
Strand: Direct
Name: mdtP [H]
Synonym: bglu_1g19970
Alternate gene names: 238027579
Gene position: 2186450-2187979 (Clockwise)
Preceding gene: 238027578
Following gene: 238027580
Centisome position: 55.97
GC content: 70.65
Gene sequence:
>1530_bases ATGTCCACTTTTGAATCACGGGCGGCGGCCATGCCGCGCAAGGGCGTGTGGCCGGTACGCGCGGCCGGTGGTCTCGTCGC GGCCGGCGCCGCGCTCGCGCTGGCCGGCTGCGTCAGCTACGCGGGCATCCACAGCGACAAGCAGGTCGCGCCGGCCTCGC AATTCGACAGTGCGCGCAGCCTGCCGGCCGAGGGCGGCCAGTGGCCCGCGCTGGACTGGGCCAGCCAGTTCGGCGACCCG CAGCTGCCGCGCCTGATCGACGAGGCGCTCGCTGGCAACCCGAGCATCGCGCAGGCCCAGGCGCGGCTCGCGAAAGCGTC CTCGTACATCGAAGCGTCGCGCGCGACGCTGCTGCCGAAAGTGGAGGGTCGCTATTCGTGGAGCCGCGAACTGTACTCGG GCAACGGCCTCTATCCGCCGCCCTACGGCGGCAACTGGTACAGCGAGAACAACGTGCTGGCGAGTGCCTCGTGGGAGCTC GACCTCTGGGGCAAGAACCGCGAGAAGCTGCGCTCGGTGGTGTCGCAGCGCAAGGCCGCGCAGGCCGAGTTCGAGCAGGC GCGCGTGACGCTCGCGACCTCGGTGGCACGCACCTACAACCAGCTCGCCCAGCTCTACGCGCTGCGTGAGATCGCGCAGC GCGAGATCCGCAACCGCGAGACGGTGGGCAAGATCACCGAGGGCCGCGTCGGTGCCGGGCTCGACACCAACGTGGAACGG CAGACCGCGCGCGGCAACGTGGCCACCAGCGAGTCGACGCTGTCCGATCTGGACGGCCGGATCACCACGGTGCGCTATCA GCTCGCGGCGCTGCTCGGCAAGGGGCCCGACCGCGGCCTGGCGATCGACACGCCGGTGCTGAACCCGGGCGGTGCAATCA CGCTGCCCGACACGATCCCGGCCGACCTGGTGTCGCGCCGGGCCGACCTGGTTGCCGCGCGCTGGCAGGTCGAGGCAGCG ATGCACGACGTGAAGGAAACCAAGGCCGAGTTCTTCCCCGACGTGAACCTCGCGGCCGGCTTCGGTTTCGATGCGTTCGG CTGGGGCAATTTCCTGAAGTTCGCGAGCCGTCAGGCCCAGTTCGGGCCGGCCATCCACCTGCCGATCTTCCATGGCGGCG CCTTGCGTGCGCAACTGAAGGGCGCCTACGCGGACTACGACCTGAGCGTGGCGAACTACAACCAGACGCTGATCGGCGCG CTCAACGACGTGGCCACGCAAGTGGCCTCGATCCGCGCGCTGGACCGGCAGATGGGTGACGCGCAGCGCGCGCTCGACGC CTCGACGCGCGCCTACGAACTCGCCGTGGTCCGCTACAAGGCCGGACTGTCGCCGCAACTGCAGGTGCTGAGCGCCGACA ACAGCCGGCTGGACGCCGAGCAGTCGGTGACCAACCTCGTGATGCGGCGCCGCGACTTGCAGATCGGCCTGATCAAGGCG CTCGGCGGCGGCTTCGACGCGGCGGGCTCGCCGCTCGCGGCCGCCGGCACGGCACCGCAGGCAGCGGCGGCGCAGCAGGC CGCCAATTGA
Upstream 100 bases:
>100_bases TACTGCGGCGAAACCAGCAGCGGCAGCAGCGGCGGCAACGCTTCGTAACACACGTCTGGGCAATCACTCTCCGATGCATC GACATAAGGAAATCCTTGCA
Downstream 100 bases:
>100_bases ACGAAGCCCTTGCCCGACACCCCCGTATCACTCGCACCAAGCACAAGCATCGACGGAGAAATTCGCCATGAGCGACCCTC AACAGAACGCGGCCGGCGCA
Product: NodT family RND efflux system outer membrane lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 508
Protein sequence:
>509_residues MSTFESRAAAMPRKGVWPVRAAGGLVAAGAALALAGCVSYAGIHSDKQVAPASQFDSARSLPAEGGQWPALDWASQFGDP QLPRLIDEALAGNPSIAQAQARLAKASSYIEASRATLLPKVEGRYSWSRELYSGNGLYPPPYGGNWYSENNVLASASWEL DLWGKNREKLRSVVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVER QTARGNVATSESTLSDLDGRITTVRYQLAALLGKGPDRGLAIDTPVLNPGGAITLPDTIPADLVSRRADLVAARWQVEAA MHDVKETKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAIHLPIFHGGALRAQLKGAYADYDLSVANYNQTLIGA LNDVATQVASIRALDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADNSRLDAEQSVTNLVMRRRDLQIGLIKA LGGGFDAAGSPLAAAGTAPQAAAAQQAAN
Sequences:
>Translated_509_residues MSTFESRAAAMPRKGVWPVRAAGGLVAAGAALALAGCVSYAGIHSDKQVAPASQFDSARSLPAEGGQWPALDWASQFGDP QLPRLIDEALAGNPSIAQAQARLAKASSYIEASRATLLPKVEGRYSWSRELYSGNGLYPPPYGGNWYSENNVLASASWEL DLWGKNREKLRSVVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVER QTARGNVATSESTLSDLDGRITTVRYQLAALLGKGPDRGLAIDTPVLNPGGAITLPDTIPADLVSRRADLVAARWQVEAA MHDVKETKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAIHLPIFHGGALRAQLKGAYADYDLSVANYNQTLIGA LNDVATQVASIRALDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADNSRLDAEQSVTNLVMRRRDLQIGLIKA LGGGFDAAGSPLAAAGTAPQAAAAQQAAN >Mature_508_residues STFESRAAAMPRKGVWPVRAAGGLVAAGAALALAGCVSYAGIHSDKQVAPASQFDSARSLPAEGGQWPALDWASQFGDPQ LPRLIDEALAGNPSIAQAQARLAKASSYIEASRATLLPKVEGRYSWSRELYSGNGLYPPPYGGNWYSENNVLASASWELD LWGKNREKLRSVVSQRKAAQAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVERQ TARGNVATSESTLSDLDGRITTVRYQLAALLGKGPDRGLAIDTPVLNPGGAITLPDTIPADLVSRRADLVAARWQVEAAM HDVKETKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQFGPAIHLPIFHGGALRAQLKGAYADYDLSVANYNQTLIGAL NDVATQVASIRALDRQMGDAQRALDASTRAYELAVVRYKAGLSPQLQVLSADNSRLDAEQSVTNLVMRRRDLQIGLIKAL GGGFDAAGSPLAAAGTAPQAAAAQQAAN
Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI2367348, Length=468, Percent_Identity=29.9145299145299, Blast_Score=190, Evalue=2e-49, Organism=Escherichia coli, GI1786785, Length=467, Percent_Identity=26.5524625267666, Blast_Score=122, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 54294; Mature: 54162
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFESRAAAMPRKGVWPVRAAGGLVAAGAALALAGCVSYAGIHSDKQVAPASQFDSARS CCCHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC LPAEGGQWPALDWASQFGDPQLPRLIDEALAGNPSIAQAQARLAKASSYIEASRATLLPK CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC VEGRYSWSRELYSGNGLYPPPYGGNWYSENNVLASASWELDLWGKNREKLRSVVSQRKAA CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHH QAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHH QTARGNVATSESTLSDLDGRITTVRYQLAALLGKGPDRGLAIDTPVLNPGGAITLPDTIP HHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCEECCCCCEECCCCCC ADLVSRRADLVAARWQVEAAMHDVKETKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHH FGPAIHLPIFHGGALRAQLKGAYADYDLSVANYNQTLIGALNDVATQVASIRALDRQMGD CCCEEEEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQRALDASTRAYELAVVRYKAGLSPQLQVLSADNSRLDAEQSVTNLVMRRRDLQIGLIKA HHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHH LGGGFDAAGSPLAAAGTAPQAAAAQQAAN HCCCCCCCCCCCCCCCCCCHHHHHHHCCC >Mature Secondary Structure STFESRAAAMPRKGVWPVRAAGGLVAAGAALALAGCVSYAGIHSDKQVAPASQFDSARS CCHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC LPAEGGQWPALDWASQFGDPQLPRLIDEALAGNPSIAQAQARLAKASSYIEASRATLLPK CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC VEGRYSWSRELYSGNGLYPPPYGGNWYSENNVLASASWELDLWGKNREKLRSVVSQRKAA CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHH QAEFEQARVTLATSVARTYNQLAQLYALREIAQREIRNRETVGKITEGRVGAGLDTNVER HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCHH QTARGNVATSESTLSDLDGRITTVRYQLAALLGKGPDRGLAIDTPVLNPGGAITLPDTIP HHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEECCCEECCCCCEECCCCCC ADLVSRRADLVAARWQVEAAMHDVKETKAEFFPDVNLAAGFGFDAFGWGNFLKFASRQAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHH FGPAIHLPIFHGGALRAQLKGAYADYDLSVANYNQTLIGALNDVATQVASIRALDRQMGD CCCEEEEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AQRALDASTRAYELAVVRYKAGLSPQLQVLSADNSRLDAEQSVTNLVMRRRDLQIGLIKA HHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHH LGGGFDAAGSPLAAAGTAPQAAAAQQAAN HCCCCCCCCCCCCCCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]