| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yedE [C]
Identifier: 238027422
GI number: 238027422
Start: 1997763
End: 1998986
Strand: Reverse
Name: yedE [C]
Synonym: bglu_1g18250
Alternate gene names: 238027422
Gene position: 1998986-1997763 (Counterclockwise)
Preceding gene: 238027423
Following gene: 238027421
Centisome position: 51.17
GC content: 73.04
Gene sequence:
>1224_bases ATGTCGACTCTGCCTTCGTCGCCGGCACGCGCCCCGCGTGCGCTCGGTGCCATCAATCCGAAGTCACTCGGTTTCGCGCT GCTGCTCGTCGTGCTCGGTGCCGTCTATCTCGCGCGGGCCGTCAGCCTCCGGCAGGCCGCGCTGTATCTCGTCGGCGCGC TGCTCGGGATGACGCTCTATCACGCCGCGTTCGGCTTCACGTCCGCGTGGCGCGTGTTCATCGCCGACCGCCGCGGCGCC GGCCTGCGCGCGCAGATGCTGATGCTCGCGATCGGCGTGCTGCTGTTCTTTCCCGCGCTGTCGGGCGGCACGCTGTTCGG CCATCCGGTGACGGGGCTCGTCTCGCCGGCCGGCACCTCGGTCGTCGTCGGCGCGTTCCTGTTCGGCCTCGGCATGCAGC TTGGCGGCGGCTGCGCCTCCGGCACGCTCTACACGGTGGGCGGCGGCAGCACGCGCATGATCGTCACGCTGCTCGCGTTC GTGGCGGGTTCGGTGGTGGCCACCGCGCACATGCCGTTCTGGACCTCGATGCCGCAGTGGAAGCCCGTCTCGCTGGTGCA TGCCTTCGGCGTGCTGCCCGCGCTCGCGCTGAGTCTCGCGGTGTTCGCCGCGATCGCCGCGCTGACCGTGGTGATCGAGA CGCGCCGCCACGGCGGCCTGGTGCGCGAGGCGCGCGCACCGCACACCTCGCCGTGGCTGCATGGCCCGTGGCCGCTGCTG GCCGGCGCCGTCGCGCTCGCCTTGCTCAACTTCGCCACGCTCGCGCTGTCGGGGCGGCCGTGGGGCGTGACCTCCGCGTT CGCGCTGTGGGGCGCGAAGGGCTTCGCCGCGCTCGGCATCGACGTCGCGAGCTGGAAGTACTGGACGGCCGGCCCCAACG CCGCCGCGCTCGCCGCGCCGGCCAGCCACGACGTGACCACCGTGATGGACATCGGCATCGTGCTGGGCGCGATGGCGGCC GCCTCGCTGGCCGGCCGCTACGCGCCCGTCTGGCGCGTGCCGCTGCGCTCGCTGCTCGCCGCCGTGGCGGGCGGGCTGCT GCTCGGTTACGGCGCGCGGCTCGCGTATGGCTGCAACATCGGCGCCTACTTCAGCGGAATCGTCTCGGGCAGCCTGCACG GCTGGCTCTGGCTCGTCTGCGCGTTCGCCGGCAACGTGCTGGGCACGCGGCTGCGCCCGTGGTTCGGCCTCGAAGTGGAG CGCGTGAAGCCCAGCGGATGCTGA
Upstream 100 bases:
>100_bases TGCCCCGAACCGGCGCGAATCCCATGATGCACGGCTTCGCGCCACGCCTTCGGGCTTCGCCGCCGGGCACCTCCTTTCGT CACGCTTCGTCTTTCCACTC
Downstream 100 bases:
>100_bases GCTCGCCGGGCGCCGGCTTTCTGCTACATTACGCCTCGCGCCGCTCGCAACGACGGCGCCCGGGCCGCGCTGCCGCCGCC GGCGCGCGCGGCGTCCGGCC
Product: YeeE/YedE family protein
Products: NA
Alternate protein names: YeeE/YedE; Integral Membrane Protein; LB Periplamsic Protein
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGA GLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAF VAGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAA ASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVE RVKPSGC
Sequences:
>Translated_407_residues MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGA GLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAF VAGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAA ASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVE RVKPSGC >Mature_406_residues STLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGAG LRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFV AGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLLA GAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAAA SLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVER VKPSGC
Specific function: Unknown
COG id: COG2391
COG function: function code R; Predicted transporter component
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41953; Mature: 41822
Theoretical pI: Translated: 11.22; Mature: 11.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLY CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAAFGFTSAWRVFIADRRGAGLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTS HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCCCHH VVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFVAGSVVATAHMPFWTSMPQW HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHH AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAP HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHEECEEHHCCEEEECCCCCCEEECC ASHDVTTVMDIGIVLGAMAAASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCH GAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVERVKPSGC HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC >Mature Secondary Structure STLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLY CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAAFGFTSAWRVFIADRRGAGLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTS HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCCCHH VVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFVAGSVVATAHMPFWTSMPQW HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC KPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHH AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAP HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHEECEEHHCCEEEECCCCCCEEECC ASHDVTTVMDIGIVLGAMAAASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNI CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCH GAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVERVKPSGC HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA