Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is yedE [C]

Identifier: 238027422

GI number: 238027422

Start: 1997763

End: 1998986

Strand: Reverse

Name: yedE [C]

Synonym: bglu_1g18250

Alternate gene names: 238027422

Gene position: 1998986-1997763 (Counterclockwise)

Preceding gene: 238027423

Following gene: 238027421

Centisome position: 51.17

GC content: 73.04

Gene sequence:

>1224_bases
ATGTCGACTCTGCCTTCGTCGCCGGCACGCGCCCCGCGTGCGCTCGGTGCCATCAATCCGAAGTCACTCGGTTTCGCGCT
GCTGCTCGTCGTGCTCGGTGCCGTCTATCTCGCGCGGGCCGTCAGCCTCCGGCAGGCCGCGCTGTATCTCGTCGGCGCGC
TGCTCGGGATGACGCTCTATCACGCCGCGTTCGGCTTCACGTCCGCGTGGCGCGTGTTCATCGCCGACCGCCGCGGCGCC
GGCCTGCGCGCGCAGATGCTGATGCTCGCGATCGGCGTGCTGCTGTTCTTTCCCGCGCTGTCGGGCGGCACGCTGTTCGG
CCATCCGGTGACGGGGCTCGTCTCGCCGGCCGGCACCTCGGTCGTCGTCGGCGCGTTCCTGTTCGGCCTCGGCATGCAGC
TTGGCGGCGGCTGCGCCTCCGGCACGCTCTACACGGTGGGCGGCGGCAGCACGCGCATGATCGTCACGCTGCTCGCGTTC
GTGGCGGGTTCGGTGGTGGCCACCGCGCACATGCCGTTCTGGACCTCGATGCCGCAGTGGAAGCCCGTCTCGCTGGTGCA
TGCCTTCGGCGTGCTGCCCGCGCTCGCGCTGAGTCTCGCGGTGTTCGCCGCGATCGCCGCGCTGACCGTGGTGATCGAGA
CGCGCCGCCACGGCGGCCTGGTGCGCGAGGCGCGCGCACCGCACACCTCGCCGTGGCTGCATGGCCCGTGGCCGCTGCTG
GCCGGCGCCGTCGCGCTCGCCTTGCTCAACTTCGCCACGCTCGCGCTGTCGGGGCGGCCGTGGGGCGTGACCTCCGCGTT
CGCGCTGTGGGGCGCGAAGGGCTTCGCCGCGCTCGGCATCGACGTCGCGAGCTGGAAGTACTGGACGGCCGGCCCCAACG
CCGCCGCGCTCGCCGCGCCGGCCAGCCACGACGTGACCACCGTGATGGACATCGGCATCGTGCTGGGCGCGATGGCGGCC
GCCTCGCTGGCCGGCCGCTACGCGCCCGTCTGGCGCGTGCCGCTGCGCTCGCTGCTCGCCGCCGTGGCGGGCGGGCTGCT
GCTCGGTTACGGCGCGCGGCTCGCGTATGGCTGCAACATCGGCGCCTACTTCAGCGGAATCGTCTCGGGCAGCCTGCACG
GCTGGCTCTGGCTCGTCTGCGCGTTCGCCGGCAACGTGCTGGGCACGCGGCTGCGCCCGTGGTTCGGCCTCGAAGTGGAG
CGCGTGAAGCCCAGCGGATGCTGA

Upstream 100 bases:

>100_bases
TGCCCCGAACCGGCGCGAATCCCATGATGCACGGCTTCGCGCCACGCCTTCGGGCTTCGCCGCCGGGCACCTCCTTTCGT
CACGCTTCGTCTTTCCACTC

Downstream 100 bases:

>100_bases
GCTCGCCGGGCGCCGGCTTTCTGCTACATTACGCCTCGCGCCGCTCGCAACGACGGCGCCCGGGCCGCGCTGCCGCCGCC
GGCGCGCGCGGCGTCCGGCC

Product: YeeE/YedE family protein

Products: NA

Alternate protein names: YeeE/YedE; Integral Membrane Protein; LB Periplamsic Protein

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGA
GLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAF
VAGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL
AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAA
ASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVE
RVKPSGC

Sequences:

>Translated_407_residues
MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGA
GLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAF
VAGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL
AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAA
ASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVE
RVKPSGC
>Mature_406_residues
STLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLYHAAFGFTSAWRVFIADRRGAG
LRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTSVVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFV
AGSVVATAHMPFWTSMPQWKPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLLA
GAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAPASHDVTTVMDIGIVLGAMAAA
SLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNIGAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVER
VKPSGC

Specific function: Unknown

COG id: COG2391

COG function: function code R; Predicted transporter component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41953; Mature: 41822

Theoretical pI: Translated: 11.22; Mature: 11.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLY
CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAAFGFTSAWRVFIADRRGAGLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTS
HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCCCHH
VVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFVAGSVVATAHMPFWTSMPQW
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHH
AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHEECEEHHCCEEEECCCCCCEEECC
ASHDVTTVMDIGIVLGAMAAASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCH
GAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVERVKPSGC
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure 
STLPSSPARAPRALGAINPKSLGFALLLVVLGAVYLARAVSLRQAALYLVGALLGMTLY
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAAFGFTSAWRVFIADRRGAGLRAQMLMLAIGVLLFFPALSGGTLFGHPVTGLVSPAGTS
HHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCCCHH
VVVGAFLFGLGMQLGGGCASGTLYTVGGGSTRMIVTLLAFVAGSVVATAHMPFWTSMPQW
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
KPVSLVHAFGVLPALALSLAVFAAIAALTVVIETRRHGGLVREARAPHTSPWLHGPWPLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHH
AGAVALALLNFATLALSGRPWGVTSAFALWGAKGFAALGIDVASWKYWTAGPNAAALAAP
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHEECEEHHCCEEEECCCCCCEEECC
ASHDVTTVMDIGIVLGAMAAASLAGRYAPVWRVPLRSLLAAVAGGLLLGYGARLAYGCNI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCH
GAYFSGIVSGSLHGWLWLVCAFAGNVLGTRLRPWFGLEVERVKPSGC
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA