BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession	NC_012724
Length	3,906,507

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The map label for this gene is fabG [H]

Identifier: 238027402

GI number: 238027402

Start: 1974333

End: 1975109

Strand: Reverse

Name: fabG [H]

Synonym: bglu_1g17980

Alternate gene names: 238027402

Gene position: 1975109-1974333 (Counterclockwise)

Preceding gene: 238027403

Following gene: 238027401

Centisome position: 50.56

GC content: 72.33

Gene sequence:

>777_bases
TTGAATCTCGATCTCGAAGACAAGGTCGTGCTGGTCACGGGCGGCGCGGCCGGCATCGGCGGCGCGATCACGCGCGCGCT
GGCCGCCGAACGCGCGATCCCGGTCGTGCTCGACCGCAACGCGCCCGGCGACGCGTTCGCGGCCGAGGTGCGCGCGCTGC
AAGCGCGCACGCGCTTCGTGCGCGCCGACCTGCTCGACGACGCGCAGTGCGAGGCCGCCGTGGCCGCCGCGCTCGCCGAG
TTCGGCCGCATCGACGCGCTCGTCAACAACGCCGGCGTCAACGACAACGTCGGCCTCGGCGCGGGCCGCGCGGCCTTCGT
CGCCTCGCTGGAACGCAACCTGATCCATTATTACGCGATGGCGCATCATTGCGAGCCGCACCTGAAGGCGAGCCGCGGCG
CGATCGTCAACCTCTCGTCGAAGACGGCGCTGACCGGCCAGGGCGGCACCAGCGGCTATTGCGCGGCCAAGGGCGCGGTG
CTCTCGCTCACGCGGGAATGGGCCGCCTCGCTGGCGCCGCATGGCGTGCGCGTCAACGCGGTGGTGCCGGCCGAGGTGAT
GACGCCGCTCTACGAATCGTGGCTGGCGAGCTTCGACGATCCGGCCGCCAAGCTCGCCGCGATCACGCAGCGCATCCCGC
TCGGCAAGCGCATGACGAGCGCCGACGAGATCGCCGCCACCGCCGTGTTCCTGCTGTCGGCGCGCGCGGCGCACACCACC
GGCCAGTGGCTGTTCGTGGACGGCGGCTATACCCACCTCGACCGCGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
CAAGCCCGGGGCGAGCGCCGCCTCGGCCTGATCCGGCGGCACCGTCCCGGAACCCGACGCACCTGAACGCATCGGGCAGC
GCATTCACGGAGGCACCCAG

Downstream 100 bases:

>100_bases
GGTGCCGAACCTGGCGTCATGCAACGCCACCCTTGACCCTTGCAACGCCGCGCTTCGTGACGCGCGGCCCAACCTGGAGG
ACACCCGATGCGGCAATGCC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MNLDLEDKVVLVTGGAAGIGGAITRALAAERAIPVVLDRNAPGDAFAAEVRALQARTRFVRADLLDDAQCEAAVAAALAE
FGRIDALVNNAGVNDNVGLGAGRAAFVASLERNLIHYYAMAHHCEPHLKASRGAIVNLSSKTALTGQGGTSGYCAAKGAV
LSLTREWAASLAPHGVRVNAVVPAEVMTPLYESWLASFDDPAAKLAAITQRIPLGKRMTSADEIAATAVFLLSARAAHTT
GQWLFVDGGYTHLDRALG

Sequences:

>Translated_258_residues
MNLDLEDKVVLVTGGAAGIGGAITRALAAERAIPVVLDRNAPGDAFAAEVRALQARTRFVRADLLDDAQCEAAVAAALAE
FGRIDALVNNAGVNDNVGLGAGRAAFVASLERNLIHYYAMAHHCEPHLKASRGAIVNLSSKTALTGQGGTSGYCAAKGAV
LSLTREWAASLAPHGVRVNAVVPAEVMTPLYESWLASFDDPAAKLAAITQRIPLGKRMTSADEIAATAVFLLSARAAHTT
GQWLFVDGGYTHLDRALG
>Mature_258_residues
MNLDLEDKVVLVTGGAAGIGGAITRALAAERAIPVVLDRNAPGDAFAAEVRALQARTRFVRADLLDDAQCEAAVAAALAE
FGRIDALVNNAGVNDNVGLGAGRAAFVASLERNLIHYYAMAHHCEPHLKASRGAIVNLSSKTALTGQGGTSGYCAAKGAV
LSLTREWAASLAPHGVRVNAVVPAEVMTPLYESWLASFDDPAAKLAAITQRIPLGKRMTSADEIAATAVFLLSARAAHTT
GQWLFVDGGYTHLDRALG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=193, Percent_Identity=36.2694300518135, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=36.6141732283465, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4758504, Length=232, Percent_Identity=30.1724137931034, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=30.8823529411765, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=30.2040816326531, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=31.7948717948718, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.5220883534137, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=29.7619047619048, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI66933014, Length=175, Percent_Identity=30.8571428571429, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI83715985, Length=182, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=33.1550802139037, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI15277342, Length=118, Percent_Identity=33.0508474576271, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7706318, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.2834645669291, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=32.5301204819277, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=28.8, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=26.8774703557312, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=29.4820717131474, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=31.9230769230769, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=31.0756972111554, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790717, Length=258, Percent_Identity=28.2945736434109, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789057, Length=265, Percent_Identity=27.5471698113208, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=32.6848249027237, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=265, Percent_Identity=31.6981132075472, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=31.25, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=31.7829457364341, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=32.1969696969697, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=30.3846153846154, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=31.3008130081301, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=30.7116104868914, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=29.6, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=29.3233082706767, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=27.710843373494, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=30.7692307692308, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=259, Percent_Identity=28.957528957529, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.9242424242424, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.9242424242424, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=263, Percent_Identity=30.0380228136882, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.0751879699248, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=272, Percent_Identity=30.1470588235294, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=29.3233082706767, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=29.1044776119403, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.277566539924, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=31.25, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=27.8810408921933, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=29.6153846153846, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=26.0204081632653, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=28.6259541984733, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=26.8041237113402, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=35.9683794466403, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=35.0597609561753, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21357041, Length=258, Percent_Identity=33.7209302325581, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.0836653386454, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=31.6205533596838, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=31.2252964426877, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17737361, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=31.640625, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 26839; Mature: 26839

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDLEDKVVLVTGGAAGIGGAITRALAAERAIPVVLDRNAPGDAFAAEVRALQARTRFV
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RADLLDDAQCEAAVAAALAEFGRIDALVNNAGVNDNVGLGAGRAAFVASLERNLIHYYAM
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AHHCEPHLKASRGAIVNLSSKTALTGQGGTSGYCAAKGAVLSLTREWAASLAPHGVRVNA
HHHCCCCHHCCCCEEEEECCCEEECCCCCCCCEEHHCCHHHHHHHHHHHHCCCCCEEEEE
VVPAEVMTPLYESWLASFDDPAAKLAAITQRIPLGKRMTSADEIAATAVFLLSARAAHTT
ECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GQWLFVDGGYTHLDRALG
CCEEEEECCHHHHHHHCC
>Mature Secondary Structure
MNLDLEDKVVLVTGGAAGIGGAITRALAAERAIPVVLDRNAPGDAFAAEVRALQARTRFV
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RADLLDDAQCEAAVAAALAEFGRIDALVNNAGVNDNVGLGAGRAAFVASLERNLIHYYAM
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AHHCEPHLKASRGAIVNLSSKTALTGQGGTSGYCAAKGAVLSLTREWAASLAPHGVRVNA
HHHCCCCHHCCCCEEEEECCCEEECCCCCCCCEEHHCCHHHHHHHHHHHHCCCCCEEEEE
VVPAEVMTPLYESWLASFDDPAAKLAAITQRIPLGKRMTSADEIAATAVFLLSARAAHTT
ECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
GQWLFVDGGYTHLDRALG
CCEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]