| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238027335
Identifier: 238027335
GI number: 238027335
Start: 1905756
End: 1906628
Strand: Direct
Name: 238027335
Synonym: bglu_1g17250
Alternate gene names: NA
Gene position: 1905756-1906628 (Clockwise)
Preceding gene: 238027332
Following gene: 238027336
Centisome position: 48.78
GC content: 63.92
Gene sequence:
>873_bases ATGAAGTTTGTGCGGGTGGCAACGGAGGGCGCGACGACGGACGGTCGCGCCATCACGCGACAACAGATTCAAGAAATGGC GGACACGTACAACCCGGCGACGTATGGCGCGCGCGTGTTTCTGGAACACATTCGCGGCGTTCTGCCCGACGGTCAGTTTC GCGCATACGGTGATATTCGCGCTGCTGAAGCGCGGACGGTCGAGGACGGCAAGCTCGCGCTGTTCGCGCAAATCGACCCC ACCGACGATCTGCGTGCGATGACGAAGGCCCGCCAGAAGATCTATTCGAGCATCGAGATTGCGCCGAATTTCGCGGACTC CGGCAAGGCATATCTCGTCGGACTCGGTGTCACCGATAGCCCGGCCAGCCTCGGCACGGAAATCCTCACGTTCTCGCAGC AACACCCGGATCACTTCAAGACGCGAAAGCTCGCACCGGAAAACCTGTTTTCGGTCGCCGTTGAGGTCGACGCGGCGTCG CTTGTCGCCGATTTGCCCGCCGACCCGGTCGCGTCGCCTGCGTCGTTCGCCTCGGCCGTAGCGGCGAAGTTTGCCGAAAT GTTCGGCATCGGCGCCAAGGATACGTCGCAACCGCCGACGCCGAAGGGTGGTCGCGCGTCGAGTGATCCGGTGCCCGGCA GTGGCGTGAGCGGCGATTCGAACGCGGATGCCGTAACGCGCCTCTCCATGCACTGCGCGTCGCAACAGGTGCTCATCGAG AACCTGTCGCGCGACCTCGCGACGATCAAGGCCGACCGCGAGAAAGACCGCGAGGCGTTCAACACTCTGAGCCAGAAGCT CGAACGCGAGCCGGGCGGGAATGCGCGACCTAGCGCCACGGGCGGCGCTGATTGGGAAGCGACCGACTGCTAA
Upstream 100 bases:
>100_bases GGCCTGTCACACAGGAGCGTGCGTTGAAGCGTTTGCAGCGCTCACGCACGATGGTGTTCACGCTCGATGAGCGGACAGGA ATCAACAGGGAGAAAACACA
Downstream 100 bases:
>100_bases CGGCGGCCGGGCTCACAGACCACAAATCGAATCACCGGAGAACACATGAACCCGATTACCCGGCGCGCACTGACGCGCTA CATGGACAATATCGCGAAGC
Product: phage capsid scaffolding protein
Products: NA
Alternate protein names: Capsid Scaffolding; Capsid Scaffolding Protein; Phage Capsid Scaffolding; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Capsid Scaffolding Protein Bacteriophage Origin; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MKFVRVATEGATTDGRAITRQQIQEMADTYNPATYGARVFLEHIRGVLPDGQFRAYGDIRAAEARTVEDGKLALFAQIDP TDDLRAMTKARQKIYSSIEIAPNFADSGKAYLVGLGVTDSPASLGTEILTFSQQHPDHFKTRKLAPENLFSVAVEVDAAS LVADLPADPVASPASFASAVAAKFAEMFGIGAKDTSQPPTPKGGRASSDPVPGSGVSGDSNADAVTRLSMHCASQQVLIE NLSRDLATIKADREKDREAFNTLSQKLEREPGGNARPSATGGADWEATDC
Sequences:
>Translated_290_residues MKFVRVATEGATTDGRAITRQQIQEMADTYNPATYGARVFLEHIRGVLPDGQFRAYGDIRAAEARTVEDGKLALFAQIDP TDDLRAMTKARQKIYSSIEIAPNFADSGKAYLVGLGVTDSPASLGTEILTFSQQHPDHFKTRKLAPENLFSVAVEVDAAS LVADLPADPVASPASFASAVAAKFAEMFGIGAKDTSQPPTPKGGRASSDPVPGSGVSGDSNADAVTRLSMHCASQQVLIE NLSRDLATIKADREKDREAFNTLSQKLEREPGGNARPSATGGADWEATDC >Mature_290_residues MKFVRVATEGATTDGRAITRQQIQEMADTYNPATYGARVFLEHIRGVLPDGQFRAYGDIRAAEARTVEDGKLALFAQIDP TDDLRAMTKARQKIYSSIEIAPNFADSGKAYLVGLGVTDSPASLGTEILTFSQQHPDHFKTRKLAPENLFSVAVEVDAAS LVADLPADPVASPASFASAVAAKFAEMFGIGAKDTSQPPTPKGGRASSDPVPGSGVSGDSNADAVTRLSMHCASQQVLIE NLSRDLATIKADREKDREAFNTLSQKLEREPGGNARPSATGGADWEATDC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30818; Mature: 30818
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFVRVATEGATTDGRAITRQQIQEMADTYNPATYGARVFLEHIRGVLPDGQFRAYGDIR CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCEE AAEARTVEDGKLALFAQIDPTDDLRAMTKARQKIYSSIEIAPNFADSGKAYLVGLGVTDS CCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC PASLGTEILTFSQQHPDHFKTRKLAPENLFSVAVEVDAASLVADLPADPVASPASFASAV CHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHEEEEHHHHHHHHHCCCCCCCCHHHHHHHH AAKFAEMFGIGAKDTSQPPTPKGGRASSDPVPGSGVSGDSNADAVTRLSMHCASQQVLIE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH NLSRDLATIKADREKDREAFNTLSQKLEREPGGNARPSATGGADWEATDC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKFVRVATEGATTDGRAITRQQIQEMADTYNPATYGARVFLEHIRGVLPDGQFRAYGDIR CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCEE AAEARTVEDGKLALFAQIDPTDDLRAMTKARQKIYSSIEIAPNFADSGKAYLVGLGVTDS CCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC PASLGTEILTFSQQHPDHFKTRKLAPENLFSVAVEVDAASLVADLPADPVASPASFASAV CHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHEEEEHHHHHHHHHCCCCCCCCHHHHHHHH AAKFAEMFGIGAKDTSQPPTPKGGRASSDPVPGSGVSGDSNADAVTRLSMHCASQQVLIE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH NLSRDLATIKADREKDREAFNTLSQKLEREPGGNARPSATGGADWEATDC HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA