| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238027198
Identifier: 238027198
GI number: 238027198
Start: 1733750
End: 1734316
Strand: Direct
Name: 238027198
Synonym: bglu_1g15840
Alternate gene names: NA
Gene position: 1733750-1734316 (Clockwise)
Preceding gene: 238027197
Following gene: 238027200
Centisome position: 44.38
GC content: 71.25
Gene sequence:
>567_bases ATGACACCTCAAATCCTCTCGGCGGCGCTGCAGATCCCGCTTGCACGCGCGACGCCGTTCGCCGCACCGATCGCGGATGC GATGGCGCGCTACGCGGTCGACACGCCCGCGCGGCAGGCCGCATTCCTCGCGCAGTGCGGCAACGAGTCCGGGCGCCTCC AGTGGCTGCGCGAGCTATGGGGGCCGACGCCTGCCCAGCGCGCCTACGAGCCGCCGGCAGCGAAGGCGCGCGAGCTCGGC AACACGCAGGCGGGCGACGGGTTTCGATACCGCGGTGGCGGACTGCTGCAGATCACCGGCCGGTACAACTTCCGCGTCTA TGGCCAGAAGATCGGTGTGCCTCTGGAAGCGAGCCCCGATCTGATCGGCCAGCCGACCACGGCCGCGCTCGTCTCCGCTC AGTTCTGGGCCGACCACGGCCTCAACGCGCTGGCTGATGCCGGCGACTTCCTCGCGATCAGCCGGGCCATCAACCTCGGC AACGCACGCGCGGCAGGCACGCCGAACGGAATGCCCGATCGCCTCGCGCTGTGGGCGTCGTGCAAGGCGGCGCTCGGCGC GGCCTGA
Upstream 100 bases:
>100_bases GGGGCGGCGCGGCCGGCGTGATCCTTCTGCGCTATGTGCAACACGAGCCCATTCCGGAATGGGCCCACGCGGTACTGAAG ATGCTGATCGGATGAACGCC
Downstream 100 bases:
>100_bases TCTATTCCGGCTGGACGTGCTTAAGTGCCCTGCCCACGGACGCGTTTGATCATGAAGGTCACGTCGTCGTTAGCATTGAG GACGGCAATTGAGACCTCAG
Product: putative phage lysozyme
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Chitinase; Pyocin R2_PP Lytic; Lysozyme; Prophage; Chitinase-Like Protein; Protease Transmembrane Protein; Family; Phage Endolysin; Phage Lysozyme; Chitinase Class I Family Protein; Glycoside Hydrolase Phage Related Protein; Hydroxyethylthiazole Kinase; Endolysin; Bacteriophage Protein; Phage Lytic; Chitinase Domain-Containing Protein; Lysozyme Phage-Related; Glycohydrolase; Peptidase; Phage-Related Lytic; Class I Chitinase; Glycoside Hydrolase; Phage Encoded Lysozyme
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MTPQILSAALQIPLARATPFAAPIADAMARYAVDTPARQAAFLAQCGNESGRLQWLRELWGPTPAQRAYEPPAAKARELG NTQAGDGFRYRGGGLLQITGRYNFRVYGQKIGVPLEASPDLIGQPTTAALVSAQFWADHGLNALADAGDFLAISRAINLG NARAAGTPNGMPDRLALWASCKAALGAA
Sequences:
>Translated_188_residues MTPQILSAALQIPLARATPFAAPIADAMARYAVDTPARQAAFLAQCGNESGRLQWLRELWGPTPAQRAYEPPAAKARELG NTQAGDGFRYRGGGLLQITGRYNFRVYGQKIGVPLEASPDLIGQPTTAALVSAQFWADHGLNALADAGDFLAISRAINLG NARAAGTPNGMPDRLALWASCKAALGAA >Mature_187_residues TPQILSAALQIPLARATPFAAPIADAMARYAVDTPARQAAFLAQCGNESGRLQWLRELWGPTPAQRAYEPPAAKARELGN TQAGDGFRYRGGGLLQITGRYNFRVYGQKIGVPLEASPDLIGQPTTAALVSAQFWADHGLNALADAGDFLAISRAINLGN ARAAGTPNGMPDRLALWASCKAALGAA
Specific function: Unknown
COG id: COG3179
COG function: function code R; Predicted chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19758; Mature: 19626
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPQILSAALQIPLARATPFAAPIADAMARYAVDTPARQAAFLAQCGNESGRLQWLRELW CCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH GPTPAQRAYEPPAAKARELGNTQAGDGFRYRGGGLLQITGRYNFRVYGQKIGVPLEASPD CCCCCHHCCCCCHHHHHHCCCCCCCCCEEECCCCEEEEECCEEEEEECCEECCCCCCCCC LIGQPTTAALVSAQFWADHGLNALADAGDFLAISRAINLGNARAAGTPNGMPDRLALWAS CCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH CKAALGAA HHHHHCCC >Mature Secondary Structure TPQILSAALQIPLARATPFAAPIADAMARYAVDTPARQAAFLAQCGNESGRLQWLRELW CHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHH GPTPAQRAYEPPAAKARELGNTQAGDGFRYRGGGLLQITGRYNFRVYGQKIGVPLEASPD CCCCCHHCCCCCHHHHHHCCCCCCCCCEEECCCCEEEEECCEEEEEECCEECCCCCCCCC LIGQPTTAALVSAQFWADHGLNALADAGDFLAISRAINLGNARAAGTPNGMPDRLALWAS CCCCCHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH CKAALGAA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA