BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession	NC_012724
Length	3,906,507

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The map label for this gene is ygfF [C]

Identifier: 238027100

GI number: 238027100

Start: 1633757

End: 1634503

Strand: Direct

Name: ygfF [C]

Synonym: bglu_1g14800

Alternate gene names: 238027100

Gene position: 1633757-1634503 (Clockwise)

Preceding gene: 238027095

Following gene: 238027103

Centisome position: 41.82

GC content: 67.74

Gene sequence:

>747_bases
ATGAGCAAACTCGAAGGAAAGGTCGCGCTTGTCACGGGCGCATCGAAGGGCATCGGCGCGGCCATCGCCAAGGCGCTGGC
CGCCCAGGGCGCCGCCGTGGTGGTCACGTACGCGAGCAGCAAGCAGGGTGCGCAGAACGTGGTGGCCGAGATCGAAAGCG
CCGGCGGCCGGGCGGTGGCGGCCGGCGGAAACGTGGCCGATGCCGATCAGGCGGCCGGCCTCGTGAAGACCGCGATCGAC
CGCTTCGGCGGCCTCGATATCGTCGTCAACAATTCCGGCGTGTACGCGTTTTCGCCGCTCGAGGCGATCACGGCGCAGGA
ATTTCACCGCCAGTTCGACACCAACGTGCTCGGCCTGCTGCTGGTCAGCCAGGCCGCCGTGCCGCATCTGAAGGAGGGCG
CCAGCATCATCAACATCAGCTCGACCGTCACGCGCATCACCCCGCCGATGAGCGCGATCTATACCGGCACCAAGGGCGCG
GTGGACGCGATCACGAACGTGCTGGCGCTGGAGCTGGCGCCGCGCAAGATCCGCGTGAACGCGATCAACCCTGGCTACGT
GACCACGGAAGGCACCTTGACGGCCGGCATCACCGGCTCGGACATGGAGAAGGAATTCGTTGCCAAGACGCCGCTGGGCC
GCGCCGGAACGCCGCAAGACATTGCCGACATCGCCGTGTTCCTCGCCTCGGACGACGCGCGCTGGCTGTCGGGCGAGCAT
CTGATGGCCGCGGGCGGCATGCGCTGA

Upstream 100 bases:

>100_bases
AGGACGCGCCGCTTTTTCGTTTGCGTTGGCCTCCCTATAGTAGTCAGGTCGATTACGGACATCGGGACCCGACGGGTCTC
CCAACGAACTGGAGGAATCC

Downstream 100 bases:

>100_bases
CTACGCGAACGCGGGCCGGGCGGGCGTTGGCCGCGGCGAAGGGCAGCGCCGCGCCGCCCTTGGTGCCCGTTTGCGTGAAG
CCTGCTTATTGCGCGCGCCG

Product: short-chain alcohol dehydrogenase-like protein

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKLEGKVALVTGASKGIGAAIAKALAAQGAAVVVTYASSKQGAQNVVAEIESAGGRAVAAGGNVADADQAAGLVKTAID
RFGGLDIVVNNSGVYAFSPLEAITAQEFHRQFDTNVLGLLLVSQAAVPHLKEGASIINISSTVTRITPPMSAIYTGTKGA
VDAITNVLALELAPRKIRVNAINPGYVTTEGTLTAGITGSDMEKEFVAKTPLGRAGTPQDIADIAVFLASDDARWLSGEH
LMAAGGMR

Sequences:

>Translated_248_residues
MSKLEGKVALVTGASKGIGAAIAKALAAQGAAVVVTYASSKQGAQNVVAEIESAGGRAVAAGGNVADADQAAGLVKTAID
RFGGLDIVVNNSGVYAFSPLEAITAQEFHRQFDTNVLGLLLVSQAAVPHLKEGASIINISSTVTRITPPMSAIYTGTKGA
VDAITNVLALELAPRKIRVNAINPGYVTTEGTLTAGITGSDMEKEFVAKTPLGRAGTPQDIADIAVFLASDDARWLSGEH
LMAAGGMR
>Mature_247_residues
SKLEGKVALVTGASKGIGAAIAKALAAQGAAVVVTYASSKQGAQNVVAEIESAGGRAVAAGGNVADADQAAGLVKTAIDR
FGGLDIVVNNSGVYAFSPLEAITAQEFHRQFDTNVLGLLLVSQAAVPHLKEGASIINISSTVTRITPPMSAIYTGTKGAV
DAITNVLALELAPRKIRVNAINPGYVTTEGTLTAGITGSDMEKEFVAKTPLGRAGTPQDIADIAVFLASDDARWLSGEHL
MAAGGMR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=36.2903225806452, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=35.9375, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=33.7349397590361, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI59889578, Length=217, Percent_Identity=35.4838709677419, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=31.0756972111554, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=31.4516129032258, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=29.7959183673469, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI126723191, Length=205, Percent_Identity=33.6585365853659, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=30.3501945525292, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=30.7377049180328, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=33.8541666666667, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI40254986, Length=157, Percent_Identity=32.484076433121, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI32455239, Length=179, Percent_Identity=33.5195530726257, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI5031765, Length=179, Percent_Identity=33.5195530726257, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI31542939, Length=189, Percent_Identity=33.8624338624339, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=27.34375, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7706318, Length=215, Percent_Identity=26.9767441860465, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI150247226, Length=205, Percent_Identity=27.8048780487805, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI20149619, Length=229, Percent_Identity=24.8908296943231, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=25.9459459459459, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=25.9459459459459, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=25.9459459459459, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=37.0967741935484, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=35.7723577235772, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=35.3658536585366, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=36.0323886639676, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=32.3770491803279, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.7269076305221, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.6771653543307, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=30.1204819277108, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=29.7959183673469, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=30.5439330543933, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=28.3464566929134, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789057, Length=254, Percent_Identity=26.3779527559055, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=27.8884462151394, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=226, Percent_Identity=26.5486725663717, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788891, Length=265, Percent_Identity=29.0566037735849, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786701, Length=204, Percent_Identity=30.3921568627451, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=35.9683794466403, Blast_Score=136, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=33.6, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=32.2097378277154, Blast_Score=114, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=31.9391634980989, Blast_Score=113, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=29.6296296296296, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=31.2252964426877, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=33.0645161290323, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.5589353612167, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=30.3370786516854, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=32.319391634981, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=32.6996197718631, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=31.5589353612167, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=31.3008130081301, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=29.811320754717, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=30.9433962264151, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.203007518797, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=29.2307692307692, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=27.8884462151394, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=28.2442748091603, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=36.4583333333333, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=30.5343511450382, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=28.3524904214559, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=30.3643724696356, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=241, Percent_Identity=27.8008298755187, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.5454545454545, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=197, Percent_Identity=29.4416243654822, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=30.3370786516854, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=257, Percent_Identity=28.7937743190661, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=27.3092369477912, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=242, Percent_Identity=30.9917355371901, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=27.710843373494, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=238, Percent_Identity=31.0924369747899, Blast_Score=82, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=191, Percent_Identity=31.413612565445, Blast_Score=73, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=36.1867704280156, Blast_Score=138, Evalue=3e-33,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=34.5098039215686, Blast_Score=127, Evalue=5e-30,
Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=34.1085271317829, Blast_Score=120, Evalue=6e-28,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=32.03125, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.6, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=33.0645161290323, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=30.9236947791165, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI18859837, Length=254, Percent_Identity=30.3149606299213, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364892, Length=197, Percent_Identity=29.4416243654822, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24640492, Length=200, Percent_Identity=28, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24580925, Length=212, Percent_Identity=28.7735849056604, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=28.0788177339901, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007234, Length=205, Percent_Identity=30.2439024390244, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281364494, Length=209, Percent_Identity=28.2296650717703, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=237, Percent_Identity=26.5822784810127, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=28.2442748091603, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25215; Mature: 25084

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLEGKVALVTGASKGIGAAIAKALAAQGAAVVVTYASSKQGAQNVVAEIESAGGRAVA
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEE
AGGNVADADQAAGLVKTAIDRFGGLDIVVNNSGVYAFSPLEAITAQEFHRQFDTNVLGLL
CCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCHHHHHH
LVSQAAVPHLKEGASIINISSTVTRITPPMSAIYTGTKGAVDAITNVLALELAPRKIRVN
HHHHHCCCHHHCCCEEEEECCHHEECCCCHHHEECCCCHHHHHHHHHHHHEECCCEEEEE
AINPGYVTTEGTLTAGITGSDMEKEFVAKTPLGRAGTPQDIADIAVFLASDDARWLSGEH
EECCCEEEECCEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHEEEEEECCCCCCCCCCE
LMAAGGMR
EEECCCCC
>Mature Secondary Structure 
SKLEGKVALVTGASKGIGAAIAKALAAQGAAVVVTYASSKQGAQNVVAEIESAGGRAVA
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEE
AGGNVADADQAAGLVKTAIDRFGGLDIVVNNSGVYAFSPLEAITAQEFHRQFDTNVLGLL
CCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHHHHCCHHHHHH
LVSQAAVPHLKEGASIINISSTVTRITPPMSAIYTGTKGAVDAITNVLALELAPRKIRVN
HHHHHCCCHHHCCCEEEEECCHHEECCCCHHHEECCCCHHHHHHHHHHHHEECCCEEEEE
AINPGYVTTEGTLTAGITGSDMEKEFVAKTPLGRAGTPQDIADIAVFLASDDARWLSGEH
EECCCEEEECCEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHEEEEEECCCCCCCCCCE
LMAAGGMR
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]