| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ndk [H]
Identifier: 238027068
GI number: 238027068
Start: 1592592
End: 1593017
Strand: Direct
Name: ndk [H]
Synonym: bglu_1g14470
Alternate gene names: 238027068
Gene position: 1592592-1593017 (Clockwise)
Preceding gene: 238027066
Following gene: 238027069
Centisome position: 40.77
GC content: 61.03
Gene sequence:
>426_bases ATGGCAATCGAGCGCACCCTGTCGATCATCAAGCCGGACGCAGTGGCAAAGAACGTGATCGGTCAGATCTACAGCCGTTT CGAAGGCGCTGGCCTGAAGGTCGTCGCGGCTCGTATGGCGCATCTGTCGCGCGGTGAAGCGGAGCAGTTCTACGCGGTTC ACGCGGCTCGTCCGTTCTTCAAGGATCTGGTCGACTTCATGATCTCGGGCCCGGTGATGATCCAGGTTCTGGAAGGCGAA AACGCGATCCAGAAGAACCGCGACCTGATGGGCGCGACCGACCCGAAGAAGGCCGAAGCCGGCACGATTCGCGCCGACTT CGCCGACAGCATCGATGCCAATGCGGTTCACGGTTCGGACGCGCCGGAAACGGCGGCCGTCGAAATCGGCTTCTTCTTCG CAGGTCTGAACGTCTACTCGCGCTAA
Upstream 100 bases:
>100_bases CCTTTCCGAGATGTAAGGGTTCGATCGCAATGATACACGGGAACGTGCTACAATAACGGATTCATTTGAAAACGTAACTT CTTAATTTCTTGGAGTTTTT
Downstream 100 bases:
>100_bases GCGGGTAGCGGGTCCGGCGCGTGCGGCAAGGCAGGGCACCATGACGAGCGATACTCCCGTCAATCTCCTCGACTTCGACG CCGAAGGTCTCGTCGCGTAT
Product: Nucleoside-diphosphate kinase
Products: NA
Alternate protein names: NDK; NDP kinase; Nucleoside-2-P kinase [H]
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MAIERTLSIIKPDAVAKNVIGQIYSRFEGAGLKVVAARMAHLSRGEAEQFYAVHAARPFFKDLVDFMISGPVMIQVLEGE NAIQKNRDLMGATDPKKAEAGTIRADFADSIDANAVHGSDAPETAAVEIGFFFAGLNVYSR
Sequences:
>Translated_141_residues MAIERTLSIIKPDAVAKNVIGQIYSRFEGAGLKVVAARMAHLSRGEAEQFYAVHAARPFFKDLVDFMISGPVMIQVLEGE NAIQKNRDLMGATDPKKAEAGTIRADFADSIDANAVHGSDAPETAAVEIGFFFAGLNVYSR >Mature_140_residues AIERTLSIIKPDAVAKNVIGQIYSRFEGAGLKVVAARMAHLSRGEAEQFYAVHAARPFFKDLVDFMISGPVMIQVLEGEN AIQKNRDLMGATDPKKAEAGTIRADFADSIDANAVHGSDAPETAAVEIGFFFAGLNVYSR
Specific function: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate [H]
COG id: COG0105
COG function: function code F; Nucleoside diphosphate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NDK family [H]
Homologues:
Organism=Homo sapiens, GI37693993, Length=132, Percent_Identity=41.6666666666667, Blast_Score=113, Evalue=7e-26, Organism=Homo sapiens, GI38045913, Length=131, Percent_Identity=40.4580152671756, Blast_Score=112, Evalue=1e-25, Organism=Homo sapiens, GI4557797, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI66392227, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI66392205, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI4505409, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI66392192, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI66392203, Length=131, Percent_Identity=40.4580152671756, Blast_Score=111, Evalue=2e-25, Organism=Homo sapiens, GI4826862, Length=130, Percent_Identity=37.6923076923077, Blast_Score=100, Evalue=7e-22, Organism=Homo sapiens, GI37574614, Length=138, Percent_Identity=36.231884057971, Blast_Score=85, Evalue=2e-17, Organism=Homo sapiens, GI7019465, Length=138, Percent_Identity=36.231884057971, Blast_Score=85, Evalue=2e-17, Organism=Homo sapiens, GI5031951, Length=136, Percent_Identity=35.2941176470588, Blast_Score=80, Evalue=8e-16, Organism=Homo sapiens, GI30023828, Length=139, Percent_Identity=33.0935251798561, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI148839372, Length=129, Percent_Identity=34.1085271317829, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI4505413, Length=135, Percent_Identity=31.8518518518519, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1788866, Length=141, Percent_Identity=59.5744680851064, Blast_Score=179, Evalue=8e-47, Organism=Caenorhabditis elegans, GI17506807, Length=130, Percent_Identity=40, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322783, Length=130, Percent_Identity=41.5384615384615, Blast_Score=118, Evalue=3e-28, Organism=Drosophila melanogaster, GI45549037, Length=130, Percent_Identity=44.6153846153846, Blast_Score=122, Evalue=6e-29, Organism=Drosophila melanogaster, GI18860097, Length=134, Percent_Identity=32.089552238806, Blast_Score=73, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001564 [H]
Pfam domain/function: PF00334 NDK [H]
EC number: =2.7.4.6 [H]
Molecular weight: Translated: 15217; Mature: 15085
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00469 NDP_KINASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIERTLSIIKPDAVAKNVIGQIYSRFEGAGLKVVAARMAHLSRGEAEQFYAVHAARPFF CCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHH KDLVDFMISGPVMIQVLEGENAIQKNRDLMGATDPKKAEAGTIRADFADSIDANAVHGSD HHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC APETAAVEIGFFFAGLNVYSR CCCCCEEEHHHHEECCHHCCC >Mature Secondary Structure AIERTLSIIKPDAVAKNVIGQIYSRFEGAGLKVVAARMAHLSRGEAEQFYAVHAARPFF CCHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHH KDLVDFMISGPVMIQVLEGENAIQKNRDLMGATDPKKAEAGTIRADFADSIDANAVHGSD HHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC APETAAVEIGFFFAGLNVYSR CCCCCEEEHHHHEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA