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The map label for this gene is yjcC [C]

Identifier: 238026684

GI number: 238026684

Start: 1135343

End: 1136629

Strand: Reverse

Name: yjcC [C]

Synonym: bglu_1g10390

Alternate gene names: 238026684

Gene position: 1136629-1135343 (Counterclockwise)

Preceding gene: 238026685

Following gene: 238026679

Centisome position: 29.1

GC content: 70.4

Gene sequence:

>1287_bases
ATGCGACCGTCTGCCGAACTGACACTCGACAACCTCGTCAGCCTGCTCGTCTCCGACGGTGCCGGCGGCTGGACCGCCGA
CTACCGCGGCCTGCGTCTCACGAGCGTGTTCCAGCCCGTGCTGTCGATCTCGCACCGGCGCATCGTCGGCTACGAGGCAC
TGGTGCGCGCGCAGGTCTCGCCTAGCGCGTCGCTCGAACCGGAAGCCCTGTTCGCGCTCGCGCACACGCGCGGCGACGCC
CCGCTCGTCGACCGCATGACGCGCTGCCTGCACGCGGCCAACTTCGCCGCCCAGGATCCCGGCCACGGCTGGCTGTTCCT
CAACGTGATGCCGCAGATGCTCGATTCGGGCAGCGCGCAGCGCGAATCGATCGACGAGCTGTGCGAGCATTTCGCGCTGC
CCCCCACGCGCGTCGTGCTGGAAGTGATCGAGCAGCCGGTACGCGACGAGGCCGCGCTCGCGCGCACCATCGACCGCATC
CAGCACCGCGACTTCCTGATCGCGATCGACGATTTCGGCACCGGCTTCTCGAACTTCGATCGTGTCTGGCAGGCGCATCC
CGACATCGTGAAGCTCGACCGCTCGCTGGTCGAGCGCGCCCAGCAGCCCGGCGACGCGCGGCGCAACATTCGCCACCTCG
TGACGATGCTGCATCAGGCCGGCGCGATGGTGCTGGCCGAGGGGATCGAGACCGAACACGCGCTGCAGGTCCTGATGGAT
GCCGACGTCGATTTCGTGCAGGGCTTCCTGTTCGGCCATCCCGAGGCCTCGCTCATGCTCGCGAGCGAGGGCGGCCCGCA
CTATATCGACCGCGCCTGGCAGCACCATGCACGGCGCCGCGCCGAGCATTCGCATGCGAAGGGCAACGGCTTCGAAGAAC
TGGAGCGGCTGGTGCTGCAGACCGCGCATGCCTATGTGGCGACCAGCGACCTGGCCGGCACGGCCGCGCCGCTGTTCGAG
TTCGCCGCGATCCGGCGTGTGTTCGTGACCGACGCGAACGGCGTGCAGCCCGAGCCGTCGATCATGCGGGCCGGCGTCGT
GACGGCCACCCAGGCCGCGCGCCTCGCGCCCCTCTTTCCCGACACGCACTGCAACTGGTCGCGGCTGCCGGTCTGGGAGC
GCGCGATCCAGTCGCCGGGCCGCGTGGTGCTGACCGGCCCGCATCATTCGCTCACCGAAGGGCGCGACGCCTGGACCGCC
GCGATCGCGTTGCCGGCCGGCGACGGGCCGACCGTGGTCTGCGTCGAATTCGTGCCCGACGGGCCCGGCGAGCCGCCGGC
GGCCTGA

Upstream 100 bases:

>100_bases
TCGGGCCGCGCGCCCGACGACGTTTCATATGCGACCGCGCGGTCCGCACCGACGATGCCACCGGCCCGCCGGCGTGCCGC
CCTCACTGGACCGACGCGCA

Downstream 100 bases:

>100_bases
GCGCGGCAACGCTCACTGCGCGCCGAGGATCGCGGCGGCGAACGTCGCCCCGACGATCACGACCGCGGCCGCCACCACCG
CGGCGCTGACGCCCACGCCG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MRPSAELTLDNLVSLLVSDGAGGWTADYRGLRLTSVFQPVLSISHRRIVGYEALVRAQVSPSASLEPEALFALAHTRGDA
PLVDRMTRCLHAANFAAQDPGHGWLFLNVMPQMLDSGSAQRESIDELCEHFALPPTRVVLEVIEQPVRDEAALARTIDRI
QHRDFLIAIDDFGTGFSNFDRVWQAHPDIVKLDRSLVERAQQPGDARRNIRHLVTMLHQAGAMVLAEGIETEHALQVLMD
ADVDFVQGFLFGHPEASLMLASEGGPHYIDRAWQHHARRRAEHSHAKGNGFEELERLVLQTAHAYVATSDLAGTAAPLFE
FAAIRRVFVTDANGVQPEPSIMRAGVVTATQAARLAPLFPDTHCNWSRLPVWERAIQSPGRVVLTGPHHSLTEGRDAWTA
AIALPAGDGPTVVCVEFVPDGPGEPPAA

Sequences:

>Translated_428_residues
MRPSAELTLDNLVSLLVSDGAGGWTADYRGLRLTSVFQPVLSISHRRIVGYEALVRAQVSPSASLEPEALFALAHTRGDA
PLVDRMTRCLHAANFAAQDPGHGWLFLNVMPQMLDSGSAQRESIDELCEHFALPPTRVVLEVIEQPVRDEAALARTIDRI
QHRDFLIAIDDFGTGFSNFDRVWQAHPDIVKLDRSLVERAQQPGDARRNIRHLVTMLHQAGAMVLAEGIETEHALQVLMD
ADVDFVQGFLFGHPEASLMLASEGGPHYIDRAWQHHARRRAEHSHAKGNGFEELERLVLQTAHAYVATSDLAGTAAPLFE
FAAIRRVFVTDANGVQPEPSIMRAGVVTATQAARLAPLFPDTHCNWSRLPVWERAIQSPGRVVLTGPHHSLTEGRDAWTA
AIALPAGDGPTVVCVEFVPDGPGEPPAA
>Mature_428_residues
MRPSAELTLDNLVSLLVSDGAGGWTADYRGLRLTSVFQPVLSISHRRIVGYEALVRAQVSPSASLEPEALFALAHTRGDA
PLVDRMTRCLHAANFAAQDPGHGWLFLNVMPQMLDSGSAQRESIDELCEHFALPPTRVVLEVIEQPVRDEAALARTIDRI
QHRDFLIAIDDFGTGFSNFDRVWQAHPDIVKLDRSLVERAQQPGDARRNIRHLVTMLHQAGAMVLAEGIETEHALQVLMD
ADVDFVQGFLFGHPEASLMLASEGGPHYIDRAWQHHARRRAEHSHAKGNGFEELERLVLQTAHAYVATSDLAGTAAPLFE
FAAIRRVFVTDANGVQPEPSIMRAGVVTATQAARLAPLFPDTHCNWSRLPVWERAIQSPGRVVLTGPHHSLTEGRDAWTA
AIALPAGDGPTVVCVEFVPDGPGEPPAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=227, Percent_Identity=25.1101321585903, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081743, Length=220, Percent_Identity=27.2727272727273, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=25.8928571428571, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=27.4261603375527, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082096, Length=151, Percent_Identity=29.8013245033113, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788849, Length=212, Percent_Identity=23.5849056603774, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787055, Length=229, Percent_Identity=25.3275109170306, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788502, Length=221, Percent_Identity=24.4343891402715, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 46807; Mature: 46807

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSAELTLDNLVSLLVSDGAGGWTADYRGLRLTSVFQPVLSISHRRIVGYEALVRAQVS
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PSASLEPEALFALAHTRGDAPLVDRMTRCLHAANFAAQDPGHGWLFLNVMPQMLDSGSAQ
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHEEHHHHHCCCCHH
RESIDELCEHFALPPTRVVLEVIEQPVRDEAALARTIDRIQHRDFLIAIDDFGTGFSNFD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
RVWQAHPDIVKLDRSLVERAQQPGDARRNIRHLVTMLHQAGAMVLAEGIETEHALQVLMD
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
ADVDFVQGFLFGHPEASLMLASEGGPHYIDRAWQHHARRRAEHSHAKGNGFEELERLVLQ
CCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TAHAYVATSDLAGTAAPLFEFAAIRRVFVTDANGVQPEPSIMRAGVVTATQAARLAPLFP
HHHHHHEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCHHHHHHHHHHCCCCC
DTHCNWSRLPVWERAIQSPGRVVLTGPHHSLTEGRDAWTAAIALPAGDGPTVVCVEFVPD
CCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECC
GPGEPPAA
CCCCCCCC
>Mature Secondary Structure
MRPSAELTLDNLVSLLVSDGAGGWTADYRGLRLTSVFQPVLSISHRRIVGYEALVRAQVS
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PSASLEPEALFALAHTRGDAPLVDRMTRCLHAANFAAQDPGHGWLFLNVMPQMLDSGSAQ
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEHEEHHHHHCCCCHH
RESIDELCEHFALPPTRVVLEVIEQPVRDEAALARTIDRIQHRDFLIAIDDFGTGFSNFD
HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
RVWQAHPDIVKLDRSLVERAQQPGDARRNIRHLVTMLHQAGAMVLAEGIETEHALQVLMD
HHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
ADVDFVQGFLFGHPEASLMLASEGGPHYIDRAWQHHARRRAEHSHAKGNGFEELERLVLQ
CCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
TAHAYVATSDLAGTAAPLFEFAAIRRVFVTDANGVQPEPSIMRAGVVTATQAARLAPLFP
HHHHHHEECCCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCHHHHHHHHHHCCCCC
DTHCNWSRLPVWERAIQSPGRVVLTGPHHSLTEGRDAWTAAIALPAGDGPTVVCVEFVPD
CCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECC
GPGEPPAA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]