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The map label for this gene is yddU [C]

Identifier: 238026665

GI number: 238026665

Start: 1098267

End: 1100102

Strand: Reverse

Name: yddU [C]

Synonym: bglu_1g10190

Alternate gene names: 238026665

Gene position: 1100102-1098267 (Counterclockwise)

Preceding gene: 238026667

Following gene: 238026664

Centisome position: 28.16

GC content: 69.06

Gene sequence:

>1836_bases
ATGGAAGCCTACAGGAACACGTCGCCCCGCAAGAGTGCATGGCACGGCGCCCTCCGCGCGCTGCGCCGACTCGCGTGGTC
CGGCGGCGCATTGATGCCTGCCCGCGCGAGTGCCCCACGCGACGACGACTCCGTCCGACACTGGTTCGAACAGACCGTCG
GCGCCGTCGATTTTCTCGCCCACGTCGACCGCGACCTGCGGTTTCTTTACGTCTCCGAGGCCAGCCTGCGCTTCATCGGC
TATCACCGCGACTATCTGCGGACGCTGACGCTGCGCGACCTGATCCCCGAGCAGGATACCGCGACGCTCGAGGCATTGCT
CGCACGCGCGAACCAGACCGGCCATGTCGAAAAGGCCACGGTCTGCATCGTCAAGTCGCTGACCTATCCGCTCGACGTCG
AGCTGCGCGCGGTGCGCAGCCGCCACGCGGGCGTGGACGGCTTCGCGATCGCCGCGTTCGACGTCTCGGCATGGCGCGCG
CTGGAGGCGCGCCTGACCTACGAGATGCACCACGACCCGATGACCGGGCTGGACAACCTGTCGGCGCTGATCCCGGGGCT
GATGGAGGCGCAGCGCGAGGCCGACGAGGACGGCAGTTGCGCGGCGCTGCTGCTGCTCGACCTCGACGACTACCAGCGCA
TCAACCGCGGGCTCGGCTACGACGCCGGCGACGTGCTGCTGCGCGACACCGCCCAGCGGCTGCGCTCGGTGATCGCCGGC
CACGAGCGCCTCGCGCGCGTGGCCAGCGACAAGTTCGCGATCGTGTTCGGCGCGCCCGACGCGCGGCAGGCGCGCGAGCA
GGCGCAGACGCTGGCGCGCCGGCTGCAGGCGGCGATCCAGCCGCCCTACCGCTACGACGGCCAGTCGGTCCACCTGTCGG
CCAGCATCGGCATCGCGCTCTACCCCGACGAGCGCCCCGGCAGCCAGCGCGCGCAGAACCACAGCCCGCTGCTGCGCCGC
GCCGATCACGCGCTGTCGCAGGCCAAGGCGCTCGGCGGCAACACGCTGGCGTTCCACCAGACCGCGGCCGACCCCGCCGA
CGGCGAGCGCCTCAAGCTAGAGGCCGACCTCTACGACGGCGTGCGCAACGGCGAATTCTCGCTGCACTTCCAGCCGATCA
CCGAAAGCCGCAGCGGCGCGGTGGCCGGCGTCGAGGCGCTGATCCGCTGGCACCATCCGGTGCACGGCATGGTGCCGCCC
ACCACCTTCATCCCGCTCGCCGAGTCGATCGGGCTGATCCACTATCTGGGCAACTGGGTGCTGAAGGCCGCCTGCATGCA
GATCGTGCAGTGGGACGAGCAGGGCATCACGCTCGAATACGTGGCCGTCAACGTCTCGCCGCAGCAGTTCCGCGATCCGC
GCTTCGTGCAGGGCGTGCGCGAGGCGATCGCGCTGACCGGCATCAGCCCGCAGCGGATCGTGCTCGAGATCACCGAGAGC
CTGCTGATGCACGACCCGGTCGGGGCGAAGGCGCTGCTCGAGGAGGTGGCCGCGCTGGGCATTCGCTTTGCCGTCGATGA
CTTCGGCACCGGTTACTCGAGCCTTGCTTATTTGCAACGGTTTCCGCTCGCCCGGCTCAAGATAGATCGCAGTTTCGTCG
AAAACCTGTTGACGTCTCGCAACGATCGCGCGATCGTGTCGGCCGTCGTCGGACTTGCGCAGACGCTCGATCTCGAACTC
GTCGCCGAAGGCGTCGAAACCGAGGCCCAGCGCGCCTTGCTGACCGAAATGGGTTGCGGCCATATCCAGGGTTGGCTGGT
CTGCCGCGCACTGCCGTCCGACGAACTCGCCCAACGTTTCGAGGCTCGCGAGCTTCGCGTGCGCGAACCGGCCTGA

Upstream 100 bases:

>100_bases
GGCTTGCATACCAATCCCACACCACTCGCTAAAGAATCATGGCCGATAGCCGTTATTGCAACCGAACCAACGGTTCCAGC
CTCACCAGCCAGCGAGAAAC

Downstream 100 bases:

>100_bases
CGGCCGCGACCGAGCCATAACCGTATGACGACATTCACCGAACACCTGCCGCAAGCAGCGCTGCTCGACAAGCTGTGGAC
CCGCATGAGCGAGCGCGGCG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MEAYRNTSPRKSAWHGALRALRRLAWSGGALMPARASAPRDDDSVRHWFEQTVGAVDFLAHVDRDLRFLYVSEASLRFIG
YHRDYLRTLTLRDLIPEQDTATLEALLARANQTGHVEKATVCIVKSLTYPLDVELRAVRSRHAGVDGFAIAAFDVSAWRA
LEARLTYEMHHDPMTGLDNLSALIPGLMEAQREADEDGSCAALLLLDLDDYQRINRGLGYDAGDVLLRDTAQRLRSVIAG
HERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYDGQSVHLSASIGIALYPDERPGSQRAQNHSPLLRR
ADHALSQAKALGGNTLAFHQTAADPADGERLKLEADLYDGVRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPP
TTFIPLAESIGLIHYLGNWVLKAACMQIVQWDEQGITLEYVAVNVSPQQFRDPRFVQGVREAIALTGISPQRIVLEITES
LLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLTEMGCGHIQGWLVCRALPSDELAQRFEARELRVREPA

Sequences:

>Translated_611_residues
MEAYRNTSPRKSAWHGALRALRRLAWSGGALMPARASAPRDDDSVRHWFEQTVGAVDFLAHVDRDLRFLYVSEASLRFIG
YHRDYLRTLTLRDLIPEQDTATLEALLARANQTGHVEKATVCIVKSLTYPLDVELRAVRSRHAGVDGFAIAAFDVSAWRA
LEARLTYEMHHDPMTGLDNLSALIPGLMEAQREADEDGSCAALLLLDLDDYQRINRGLGYDAGDVLLRDTAQRLRSVIAG
HERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYDGQSVHLSASIGIALYPDERPGSQRAQNHSPLLRR
ADHALSQAKALGGNTLAFHQTAADPADGERLKLEADLYDGVRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPP
TTFIPLAESIGLIHYLGNWVLKAACMQIVQWDEQGITLEYVAVNVSPQQFRDPRFVQGVREAIALTGISPQRIVLEITES
LLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLTEMGCGHIQGWLVCRALPSDELAQRFEARELRVREPA
>Mature_611_residues
MEAYRNTSPRKSAWHGALRALRRLAWSGGALMPARASAPRDDDSVRHWFEQTVGAVDFLAHVDRDLRFLYVSEASLRFIG
YHRDYLRTLTLRDLIPEQDTATLEALLARANQTGHVEKATVCIVKSLTYPLDVELRAVRSRHAGVDGFAIAAFDVSAWRA
LEARLTYEMHHDPMTGLDNLSALIPGLMEAQREADEDGSCAALLLLDLDDYQRINRGLGYDAGDVLLRDTAQRLRSVIAG
HERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYDGQSVHLSASIGIALYPDERPGSQRAQNHSPLLRR
ADHALSQAKALGGNTLAFHQTAADPADGERLKLEADLYDGVRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPP
TTFIPLAESIGLIHYLGNWVLKAACMQIVQWDEQGITLEYVAVNVSPQQFRDPRFVQGVREAIALTGISPQRIVLEITES
LLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLEL
VAEGVETEAQRALLTEMGCGHIQGWLVCRALPSDELAQRFEARELRVREPA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=33.411214953271, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI1787541, Length=440, Percent_Identity=32.5, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=30.9352517985612, Blast_Score=185, Evalue=6e-48,
Organism=Escherichia coli, GI87081743, Length=240, Percent_Identity=32.9166666666667, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=31.7269076305221, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=34.3220338983051, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=32.7868852459016, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.6693227091633, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787055, Length=384, Percent_Identity=24.7395833333333, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=31.3492063492063, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=29.5081967213115, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=439, Percent_Identity=24.8291571753986, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787410, Length=246, Percent_Identity=25.2032520325203, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=492, Percent_Identity=22.7642276422764, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 67623; Mature: 67623

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAYRNTSPRKSAWHGALRALRRLAWSGGALMPARASAPRDDDSVRHWFEQTVGAVDFLA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVDRDLRFLYVSEASLRFIGYHRDYLRTLTLRDLIPEQDTATLEALLARANQTGHVEKAT
HCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHH
VCIVKSLTYPLDVELRAVRSRHAGVDGFAIAAFDVSAWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHEEECCCCCCCHHHH
SALIPGLMEAQREADEDGSCAALLLLDLDDYQRINRGLGYDAGDVLLRDTAQRLRSVIAG
HHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYDGQSVHLSASIGIAL
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEE
YPDERPGSQRAQNHSPLLRRADHALSQAKALGGNTLAFHQTAADPADGERLKLEADLYDG
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEHHHCC
VRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPPTTFIPLAESIGLIHYLGNWV
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKAACMQIVQWDEQGITLEYVAVNVSPQQFRDPRFVQGVREAIALTGISPQRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARLKIDRSFVENLLTSR
HHHCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLTEMGCGHIQGWLVCRALPSDELAQRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHEEECCCCHHHHHHH
EARELRVREPA
HHHHCCCCCCC
>Mature Secondary Structure
MEAYRNTSPRKSAWHGALRALRRLAWSGGALMPARASAPRDDDSVRHWFEQTVGAVDFLA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVDRDLRFLYVSEASLRFIGYHRDYLRTLTLRDLIPEQDTATLEALLARANQTGHVEKAT
HCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHH
VCIVKSLTYPLDVELRAVRSRHAGVDGFAIAAFDVSAWRALEARLTYEMHHDPMTGLDNL
HHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHEEECCCCCCCHHHH
SALIPGLMEAQREADEDGSCAALLLLDLDDYQRINRGLGYDAGDVLLRDTAQRLRSVIAG
HHHHHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYDGQSVHLSASIGIAL
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEE
YPDERPGSQRAQNHSPLLRRADHALSQAKALGGNTLAFHQTAADPADGERLKLEADLYDG
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEHHHCC
VRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPPTTFIPLAESIGLIHYLGNWV
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKAACMQIVQWDEQGITLEYVAVNVSPQQFRDPRFVQGVREAIALTGISPQRIVLEITES
HHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARLKIDRSFVENLLTSR
HHHCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
NDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLTEMGCGHIQGWLVCRALPSDELAQRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHEEECCCCHHHHHHH
EARELRVREPA
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]