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The map label for this gene is rimM [H]

Identifier: 238026560

GI number: 238026560

Start: 982364

End: 983077

Strand: Direct

Name: rimM [H]

Synonym: bglu_1g09040

Alternate gene names: 238026560

Gene position: 982364-983077 (Clockwise)

Preceding gene: 238026559

Following gene: 238026561

Centisome position: 25.15

GC content: 67.09

Gene sequence:

>714_bases
ATGTCCGGTCACGATTCATCCGGCGATGCAAAGCGCGGCACACGCGAAGCTTCGCAGTTTGGTGTGTTCGTCCGCAAGCC
GGTCGAGCGCGCGTCCGCCAAGGGCGGCGCGAGGCCGGAAGCAGCAAGCGGGAACCCGGGGCATGCCTCGGCCAGCATCG
AGCCGGTGCAGTCCTGGCCTGACGATGCGGTCGAGGTCGGCGCGATCGTCGATGCCTATGGCCTGAAAGGCTGGGTCAAG
ATCCTGCCCCACGCGGGCGCGGGCCGCGGCGGCGATGCGCTGCTGAAGGCGCGCCTCTGGTGGCTGCGCAAGGATGCCGA
AAGCCTGTGCGCGCAGATCACGCAGTCGAAGTTGCATGCCGATACCGTCGTCGCGCATCCGGCCGGCCTGGCCGATCGCG
ATCAGGCGCTGGCACTGCGCGGCTACCGCGTGTTCGTGCGCCGTGAGGATTTTCCGGCGCTCGACACCGACGAATTTTAC
TGGGTCGATCTGATCGGCCTGGAAGTGGTCAACGAGGCGGGCACCGCGCTCGGCCGCGTCGGCGACATGATCGACAACGG
CGTGCATTCGATCATGCGGGTCGACTATCCGGCCAGCGGCAAGGACGGGCGCCCGGTCACCGGCGAGCGGCTGATTCCGT
TCGTCGGCGTGTACGTGAAAACGGTCGATCAGGCGGCGAAGCGCATCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
TCGCCCACCGTCGCTCGCCTCGTGAAGGAAGCGCAAAAGGCGCAGCCGGCTGCCTGACATGGCACGGTTTTCCGGTGGTC
GCGGCCGCGAGGTGGTCTGA

Downstream 100 bases:

>100_bases
AATGAATGACGCCGAGGCGCGCGCGATGCAGTTCGATGTCGTCACGCTCTTTCCCGAGATGTTCGCCGCGCTGACCGACT
GGGGCATTACCAGCCGGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSGHDSSGDAKRGTREASQFGVFVRKPVERASAKGGARPEAASGNPGHASASIEPVQSWPDDAVEVGAIVDAYGLKGWVK
ILPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLHADTVVAHPAGLADRDQALALRGYRVFVRREDFPALDTDEFY
WVDLIGLEVVNEAGTALGRVGDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVDWEADY

Sequences:

>Translated_237_residues
MSGHDSSGDAKRGTREASQFGVFVRKPVERASAKGGARPEAASGNPGHASASIEPVQSWPDDAVEVGAIVDAYGLKGWVK
ILPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLHADTVVAHPAGLADRDQALALRGYRVFVRREDFPALDTDEFY
WVDLIGLEVVNEAGTALGRVGDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVDWEADY
>Mature_236_residues
SGHDSSGDAKRGTREASQFGVFVRKPVERASAKGGARPEAASGNPGHASASIEPVQSWPDDAVEVGAIVDAYGLKGWVKI
LPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLHADTVVAHPAGLADRDQALALRGYRVFVRREDFPALDTDEFYW
VDLIGLEVVNEAGTALGRVGDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=28.4916201117318, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 25518; Mature: 25387

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHDSSGDAKRGTREASQFGVFVRKPVERASAKGGARPEAASGNPGHASASIEPVQSWP
CCCCCCCCCCHHCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
DDAVEVGAIVDAYGLKGWVKILPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLHA
CHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVVAHPAGLADRDQALALRGYRVFVRREDFPALDTDEFYWVDLIGLEVVNEAGTALGRV
HHEEECCCCCCCCCHHEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH
GDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVDWEADY
HHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
SGHDSSGDAKRGTREASQFGVFVRKPVERASAKGGARPEAASGNPGHASASIEPVQSWP
CCCCCCCCCHHCHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCC
DDAVEVGAIVDAYGLKGWVKILPHAGAGRGGDALLKARLWWLRKDAESLCAQITQSKLHA
CHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVVAHPAGLADRDQALALRGYRVFVRREDFPALDTDEFYWVDLIGLEVVNEAGTALGRV
HHEEECCCCCCCCCHHEEEEEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH
GDMIDNGVHSIMRVDYPASGKDGRPVTGERLIPFVGVYVKTVDQAAKRIVVDWEADY
HHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA