| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is gyrA [H]
Identifier: 238026529
GI number: 238026529
Start: 949083
End: 951692
Strand: Direct
Name: gyrA [H]
Synonym: bglu_1g08730
Alternate gene names: 238026529
Gene position: 949083-951692 (Clockwise)
Preceding gene: 238026523
Following gene: 238026530
Centisome position: 24.29
GC content: 65.29
Gene sequence:
>2610_bases ATGGATCAATTCGCCAAAGAGACCCTGCCCATCTCCCTAGAGGAGGAAATGCGCCGTTCGTATCTCGATTACGCGATGAG CGTGATCGTCGGACGTGCCCTCCCGGATGTCCGCGACGGCCTGAAGCCCGTGCACCGGCGCGTGCTGTTCGCGATGCACG AACTGAACAACGACTGGAACCGGGCGTACAAGAAGTCGGCGCGTATCGTCGGCGACGTGATCGGTAAATACCATCCGCAC GGCGACAGCGCGGTCTACGACACGATCGTCCGGATGGCGCAGGACTTCTCGCTGCGCTACATGCTGGTCGACGGTCAGGG CAACTTCGGTTCGGTCGATGGCGACAATGCCGCCGCGATGCGTTACACCGAAATCCGCATGGCGAAGATCGGCCACGAGC TGCTGGCCGACATCGACAAGGAAACGGTCGATTTCGGGCCCAACTACGACGGCAGCGAGAGCGAGCCGACGATCCTCCCG GCGCGGATTCCGAACCTGCTGATCAACGGCTCGTCGGGGATCGCGGTCGGGATGGCGACCAACATCCCGCCGCACAACCT GTCGGAAGTCGTCGACGCCTGCCACCATCTGCTCGCGAATCCGGAGGCGACGGTCGACGAACTGATCGAGATCATCCCGG CGCCCGATTTCCCGACAGCCGGCATCATCTACGGCGTGGCTGGCGTGCGCGACGGCTACCGCACCGGGCGCGGGCGGGTC GTGATGCGCGCGGCCACCCACTTCGAGGAAATCGATCGCGGCCAGCGCATGGCGATCATCGTCGACGAGCTGCCCTATCA GGTGAACAAGCGCTCGCTGCTCGAGCGCATCGCCGAGCTCGTGAACGAGAAGAAGCTCGAGGGCATCTCCGACATCCGCG ACGAGTCCGACAAGAGCGGCATGCGCGTCGTGATCGAGCTCAAGCGCGGCGAGGTACCCGAGGTCGTGCTGAACAACCTC TACAAGTCCACGCAGCTGCAGGACACGTTCGGCATGAACATGGTCGCGCTCGTCGACGGCCAGCCGAAGCTGCTGAACCT GAAGGAGATGCTGGTCTGCTTCCTCGCGCATCGGCGCGAGGTGCTGACGCGGCGCACGATCTACGAACTGCGCAAGGCGC GCGAGCGCGGCCACGTGCTCGAGGGTCTGGCCGTCGCCCTTGCCAATATCGACGAGTTCATCGAGATCATCAAGGCCGCG CCGACGCCGCCGATCGCGCGTCAGGCGCTGATGGCGAAGTCGTGGGATTCTTCGCTGGTGCGCGAGATGCTCACGCGCGC AGAGACCGAGAACGCGGCGGCGGGCGGCCGCGAGGCGTATCGCCCGGAAGGCCTGAATGCGGCGTTCGGGATGCAGGCCG ACGGCCAGTACAACCTGTCCGAGACGCAGGCCCAGGAAATCCTGCAGATGCGTCTGCAGCGCCTGACCGGCCTCGAACAG GACAAGATCATCGGCGAGTACCGCGAGGTGATGGCGCAGATCGCCGACCTGCTCGACATCCTCGCGCGTCCGGAGCGCAT CACGACCATCATTACCGAGGAACTGACGGCGGTGAAGGCCGAGTTCGGCGACGCGCGCCGCTCGAAGATCGAGCTGAACG CGACCGAGCTGAACACGGAGGACCTGATCACGCCGCAGGACATGGTCGTGACCATGTCGCATGCCGGTTACGTGAAGTCG CAGCCGCTGTCCGAATACCGCGCGCAAAAGCGCGGCGGGCGCGGCAAGCAGGCCACCCAGATGAAGGAAGACGACTGGAT CGAGACGCTCTTCATCGCCAACACGCACGACTACATCCTCTGTTTCTCGAACCGCGGCCGCGTGTACTGGGTCAAGGTCT ACGAGGTGCCGCAGGGCTCGCGCAACTCGCGCGGCCGGCCGATCGTCAACATGTTCCCGCTGCAGGAAGGCGAGAAGATC AACGTCGTGCTGCCGGTGCGCGAGTTCTCGGCCGACAAGTACGTCTTCATGGCGACCTCCCTCGGCACCGTGAAGAAGAC GCCGCTCGAAGCCTTCAGCCGCCCGATGAAGAAGGGCATCATCGCGGTCGGCCTCGATGACGGCGACTTCCTGATCGGCG CGTCGATCACCGACGGCGAGCACGACGTGATGCTGTTCTCCGATTCGGGCAAGGCGGTGCGCTTCGACGAGAACGACGTG CGCCCGATGGGGCGCGAGGCGCGCGGCGTGCGCGGCATGCAGCTCGAGGACGGCCAGCAGGTCATCGCGATGCTGGTGGC GGGCGGCGAGGAGCAGTCGGTGCTGACCGCGACCGAGAACGGGTACGGCAAGCGCACGCCGATCACGGAATACACGCGTC ACGGTCGCGGCACGAAGGGGATGATCGCGATCCAGACGTCGGAGCGCAACGGCCGCGTGGTGGCCGCCACGCTCGTCGAT CCCGAGGATCAGATCATGTTGATCACGACGGCGGGCGTGCTGATCCGCACGCGCGTGTCGGAGATCCGCGAAATGGGCCG GGCGACGCAAGGTGTTACACTCATCAGTCTCGATGAGGGCACCAAGCTTTCGGGCCTGCAGCAGATCGCGGAGGCGGACG CGGACAGCGATGTCGACGCCGACGACGTACCGGAGGGCGGCGACGCCTGA
Upstream 100 bases:
>100_bases TCGGCGCGGTTTTGCCGCATGATAGAATCGCACGTTGCGTCGTGACCACGGCGCTCACGCGAAAGGCGGTCCCGTCTTCG CTCCGAAACGACACGGATAC
Downstream 100 bases:
>100_bases CCGGGCGGCGGCTGCCGGCCGCCGGGCGGGAACCGCTGAAGCGGTCGCGCCCGGCGGTGCAACAATCGTTCATATTTCCA TGAGGGAGTGATGATGCAAA
Product: DNA gyrase subunit A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILP ARIPNLLINGSSGIAVGMATNIPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRV VMRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAA PTPPIARQALMAKSWDSSLVREMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQ DKIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAGYVKS QPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKI NVVLPVREFSADKYVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDV RPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVD PEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEADADSDVDADDVPEGGDA
Sequences:
>Translated_869_residues MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILP ARIPNLLINGSSGIAVGMATNIPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRV VMRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAA PTPPIARQALMAKSWDSSLVREMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQ DKIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAGYVKS QPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKI NVVLPVREFSADKYVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDV RPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVD PEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEADADSDVDADDVPEGGDA >Mature_869_residues MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILP ARIPNLLINGSSGIAVGMATNIPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRV VMRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNL YKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAA PTPPIARQALMAKSWDSSLVREMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQ DKIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAGYVKS QPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKI NVVLPVREFSADKYVFMATSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDV RPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVD PEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEADADSDVDADDVPEGGDA
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0188
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the topoisomerase gyrA/parC subunit family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=321, Percent_Identity=26.4797507788162, Blast_Score=91, Evalue=6e-18, Organism=Homo sapiens, GI19913408, Length=320, Percent_Identity=25.9375, Blast_Score=88, Evalue=4e-17, Organism=Escherichia coli, GI1788562, Length=870, Percent_Identity=60.2298850574713, Blast_Score=1057, Evalue=0.0, Organism=Escherichia coli, GI1789396, Length=719, Percent_Identity=35.326842837274, Blast_Score=398, Evalue=1e-112, Organism=Caenorhabditis elegans, GI17535065, Length=497, Percent_Identity=25.1509054325956, Blast_Score=86, Evalue=9e-17, Organism=Caenorhabditis elegans, GI212645657, Length=518, Percent_Identity=23.9382239382239, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212645845, Length=188, Percent_Identity=31.9148936170213, Blast_Score=77, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324241, Length=347, Percent_Identity=26.5129682997118, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI17136538, Length=349, Percent_Identity=26.3610315186246, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020899 - InterPro: IPR005743 - InterPro: IPR006691 - InterPro: IPR002205 - InterPro: IPR013758 - InterPro: IPR013757 - InterPro: IPR013760 [H]
Pfam domain/function: PF03989 DNA_gyraseA_C; PF00521 DNA_topoisoIV [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 96422; Mature: 96422
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH RAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEECCCCCEEEEECCCCEEEEEEC NIPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCE VMRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSG EEHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRRE CEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCEECHHHHHHHHHHHHHH VLTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH REMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQ HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCH DKIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTE HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHEECCHH DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL HCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEE CFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMATS EECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCEEEEEEC LGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDV CCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCEEEECCCCC RPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKG CCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCC MIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG EEEEEECCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCHHCCEEEEEECCC TKLSGLQQIAEADADSDVDADDVPEGGDA CCHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHH RAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEE RYTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMAT EHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCEECCCCCEEEEECCCCEEEEEEC NIPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRV CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCE VMRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSG EEHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC MRVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRRE CEEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCEEEEECCCCCEECHHHHHHHHHHHHHH VLTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLV HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH REMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQ HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCH DKIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTE HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHEECCHH DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL HCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEE CFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSADKYVFMATS EECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCEEEEEEC LGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDV CCCCCCCCHHHHHHHHHCCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCEEEECCCCC RPMGREARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRGTKG CCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCC MIAIQTSERNGRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG EEEEEECCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCHHCCEEEEEECCC TKLSGLQQIAEADADSDVDADDVPEGGDA CCHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7811002; 10984043 [H]