| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yhjE [H]
Identifier: 238026480
GI number: 238026480
Start: 889146
End: 890456
Strand: Reverse
Name: yhjE [H]
Synonym: bglu_1g08240
Alternate gene names: 238026480
Gene position: 890456-889146 (Counterclockwise)
Preceding gene: 238026481
Following gene: 238026479
Centisome position: 22.79
GC content: 69.79
Gene sequence:
>1311_bases ATGTCCTCCACCCCAGCGACGGCCGACGCCGCGCAGCACGGATCGAGCACGGCCAGCCAGCGGCGCATCGTCTTCGCCAG CTTCATCGGCACCGCGATCGAGTTCTACGATTTCTATGTCTACGCCACCGCCGCCGCGCTCGTGATCGGCCCGGTGTTCT TCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCGGCGTTCGTCACGTTCGGCATCGCGTTCATCGCCCGGCCGATCGGC TCGTTCCTGTTCGGCCACTTCGGCGACCGCTTCGGCCGCAAGTCCACGCTGGTCGCCTCGCTCTTGGTGATGGGCGTCTC CACCACGGCGATCGGCTTCGTGCCGGGCTATGACGCGATCGGCACGGTCGCGCCGGTGCTGCTGTGCGTGCTGCGCTTCG GCCAGGGCATCGGCCTGGGTGGCGAATGGGGCGGCGCGGCGCTGCTGGCCACCGAACACGCCCCGGCCGGCAAGCGCGGC TGGTTCGGCATGTTCCCGCAGCTCGGCCCGTCGATCGGCTTCCTGATGTCGAACGGCCTGTTCTTCGCGCTCGCGATCGG CCTGTCCGACGAGCAGTTCCGCAGCTGGGGCTGGCGCGTGCCGTTCCTGGTCAGCGCGGTGCTGGTGGCAGTCGGCCTGT ACGTGCGCATGAAGATCGCCGAGACGCCCGCGTTCCGGGCCGCGATCGAGCGCAACGAGCGCGTGCGCGTGCCGGTGCTC GCCCTGATCTCGCAGCACTGGGCGCCCACCCTGCTCGGCGCGCTGTCGATGGTGGTCTGCTATACGCTGTTCTACATCTC GACGGTGTTCTCGCTGTCCTACGGCGTCGGCACGCTGCACATCGCGCGCACCGACTTCCTCGGCCTGCTCTGCATCGCAG TGGTGTTCATGGCGATCGCCACGCCGATCTCGGCCTCGGCCGCCGATCGCTACGGCCGCAAGCCGGTGCTGATCGTCGGC GGCCTGCTGGCCCTGCTGTCGGGCTTCACGATGGCCCCGCTGCTCGGCAGCGGCTCGATGCCGCTGGTCGCGCTCTACCT GATCATCGAGCTGTTCCTGATGGGCGTGACCTTCGCGCCGATGGGCGCGCTGCTGCCCGAGCTGTTTCCCACCCACGTCC GCTACACGGGGGCGGGCGTCGCCTACAACCTCGGCGGCATCCTCGGCGCCTCGATCGCGCCGTACATCGCGCAACTGCTT GTCGCGCGCGGCGGGCTGTCGTGGGTGGGCGGCTACGTGTCGGCGGCCGCGGCGCTCAGCTTGATCGGCGTGCTGCTGAT GCGCGAAACGCGCGACGCACGTCTGATGTGA
Upstream 100 bases:
>100_bases CCGGCACCGGCGCAGCACGCGCGGGCCGGCTTCATGCCAATCATTCGAATATCCGGCCGGCACCCTCGCGTGCCGTTTGC CCCGCACCACGGAAACCATC
Downstream 100 bases:
>100_bases GCCGGCGGCGAGGCCGCGCGATCGGTCGTGCCGGCCCGCCGTGCGGCCATCGAGGGCGCGCGGGCACACCGCCGCCCGTC AGCTTGCGGCCTCGGCCCGC
Product: general substrate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIG SFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRG WFGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVG GLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLL VARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM
Sequences:
>Translated_436_residues MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIG SFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRG WFGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVG GLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLL VARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM >Mature_435_residues SSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGS FLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAIGTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGW FGMFPQLGPSIGFLMSNGLFFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVLA LISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIATPISASAADRYGRKPVLIVGG LLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAPMGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLV ARGGLSWVGGYVSAAAALSLIGVLLMRETRDARLM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=440, Percent_Identity=52.7272727272727, Blast_Score=390, Evalue=1e-110, Organism=Escherichia coli, GI1788292, Length=439, Percent_Identity=35.3075170842825, Blast_Score=257, Evalue=1e-69, Organism=Escherichia coli, GI1790550, Length=427, Percent_Identity=30.6791569086651, Blast_Score=218, Evalue=4e-58, Organism=Escherichia coli, GI1788942, Length=449, Percent_Identity=30.5122494432071, Blast_Score=162, Evalue=3e-41, Organism=Escherichia coli, GI87082404, Length=414, Percent_Identity=25.6038647342995, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87082231, Length=336, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 45886; Mature: 45754
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSAT CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH AQALSAFVTFGIAFIARPIGSFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHH GTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLMSNGL HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHCCE FFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL EEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH TPISASAADRYGRKPVLIVGGLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAP CCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH MGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLVARGGLSWVGGYVSAAAALS HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LIGVLLMRETRDARLM HHHHHHHHHCCCCCCC >Mature Secondary Structure SSTPATADAAQHGSSTASQRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSAT CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH AQALSAFVTFGIAFIARPIGSFLFGHFGDRFGRKSTLVASLLVMGVSTTAIGFVPGYDAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCHH GTVAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLMSNGL HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHCCE FFALAIGLSDEQFRSWGWRVPFLVSAVLVAVGLYVRMKIAETPAFRAAIERNERVRVPVL EEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH ALISQHWAPTLLGALSMVVCYTLFYISTVFSLSYGVGTLHIARTDFLGLLCIAVVFMAIA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH TPISASAADRYGRKPVLIVGGLLALLSGFTMAPLLGSGSMPLVALYLIIELFLMGVTFAP CCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH MGALLPELFPTHVRYTGAGVAYNLGGILGASIAPYIAQLLVARGGLSWVGGYVSAAAALS HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH LIGVLLMRETRDARLM HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]