Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238026463

Identifier: 238026463

GI number: 238026463

Start: 869941

End: 871188

Strand: Direct

Name: 238026463

Synonym: bglu_1g08070

Alternate gene names: NA

Gene position: 869941-871188 (Clockwise)

Preceding gene: 238026459

Following gene: 238026464

Centisome position: 22.27

GC content: 65.46

Gene sequence:

>1248_bases
ATGAAAGTTCGCGCGATGATGGGCGCGCTGTGCGCCGCAGGCCTGATGTTCGGTGCCGCCACGGCGCAGGCGGCCGAGGA
CGTGACGGTGCTGCACTGGTGGACCTCGGGTGGCGAGTCGAAGGCAGTGGGCGTGCTGAAGGACGACCTGCAGAAGCAGG
GCTACGTGTGGAAGGATTTCGCGGTGGCGGGCGGCGCGGGCGCGGCGGCCATGACCGCGCTGAAGACCAAGGTGATCAGC
GGCGACGCACCGTCGGCCGCGCAGATCAAGGGTCCGCTGATTCAGGAATGGGCCGACCAGGGCGTGCTGGTCAACATCGA
CTCGGTCGCGGGTGACTGGAAGCAGAACCTGCCGCCGGAAATCGACAAGATCATCAAGTACAAGGGCCACTACGTGGCGG
CACCGTTCTCGGTGCATCGCGTGAACTGGCTGTACATCAACAAGGCCGCGCTCGACAAGGCGGGCGGCAAGGTGCCGACC
AACTGGCCGGAATTCTTCCAGGTCGCCGACAAGATGAAGGCCGCCGGCATCCAGCCGATCGCGATGGGCGGCCAGCCGTG
GCAGGATCTGACGCTGTGGGAGGACGTGGTGCTGTCCGAAGGCGCCGACTTCTACAAGAAGGCGCTCGTCGATCTCGACC
AGGCGACGCTGACTTCGCCGAAGATGCTCGACGTGTTCAACACGGTGCGCAAGATCCAGGGCTACTTCGACCCGAGCCGC
AACGGCCGCGACTGGAACCTGGCCACGGCGATGGTGATCAACGGCAAGGCCGGCATGCAGTTCATGGGCGACTGGGCCAA
GGGCGAGTTCGAGAACGCCGGCAAGAAGTCGGGCAAGGACTACATCTGCGCGCCGGTGCCGGGCACCGCGAACGGCTACA
CGTTCAACGTCGACTCGTTCGTGTTCTTCCAGCAGAAGGGTTCGGACAAGGCCACGCCGGGCCAGCTGGCGCTCGCCAAG
ACCATCATGACGCCGGGCTTCCAGGAGCAGTTCAGCCTGCTGAAGGGCTCGATTCCGGTGCGCCTGGGCGTGAAGATGGA
CAAGTTCGACGACTGCGCGAAGAAGTCCTACGCGGATGAGCAGGCCGCCCTGAAGGCGGGCGGCTACGTGCCCTCGCTGG
CGCACGGCATGGCGCAGGGCGATGCCACCGCCGGCGCGATCTCGGACGTCGTGACCAAGTTCATGAACTCGCAGGAAGAT
CCGAAGGCCGCGGTGGCGGCACTCGCCAAGGCCGCCAAGGTGAAGTAA

Upstream 100 bases:

>100_bases
CATTCCGGTGGTGTCGTTATGCAGGTTCCCGAGCAAGCCGGCTTTCGCGGAGTCGAAAGCCTTACGAGTTGGTTCAATCC
AATCTGGAGGAGATAAGTCA

Downstream 100 bases:

>100_bases
TCGCGCAGCGGGCGGCGCCGGCAGGCTTCACGCCGGCACCGCCCGAAGCGAGGCAAGCGGGCTCTCGCGGGCCCGCGCCG
CACCCCGATGCCGTGCGCCT

Product: sugar ABC transporter periplasmic protein

Products: NA

Alternate protein names: Immunogenic 39 kDa protein; P39 [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS
GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT
NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK
TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED
PKAAVAALAKAAKVK

Sequences:

>Translated_415_residues
MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS
GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT
NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK
TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED
PKAAVAALAKAAKVK
>Mature_415_residues
MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS
GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT
NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK
TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED
PKAAVAALAKAAKVK

Specific function: Part of a binding-protein-dependent transport system for a sugar (Potential) [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 44390; Mature: 44390

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE
AVAGGAGAAAMTALKTKVISGDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPE
EECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHCCCCEEEEEHHHCCCHHHCCCHH
IDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPTNWPEFFQVADKMKAAGIQPI
HHHHHHHCCCEEECCCEEEEEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE
AMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR
ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCCCC
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSF
CCCCCEEEEEEEEECCCCCHHHCCCCCCCHHCCCCCCCCCEEEECCCCCCCCEEEECCEE
VFFQQKGSDKATPGQLALAKTIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADE
EEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCHH
QAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQEDPKAAVAALAKAAKVK
HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE
AVAGGAGAAAMTALKTKVISGDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPE
EECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHCCCCEEEEEHHHCCCHHHCCCHH
IDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPTNWPEFFQVADKMKAAGIQPI
HHHHHHHCCCEEECCCEEEEEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE
AMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR
ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCCCC
NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSF
CCCCCEEEEEEEEECCCCCHHHCCCCCCCHHCCCCCCCCCEEEECCCCCCCCEEEECCEE
VFFQQKGSDKATPGQLALAKTIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADE
EEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCHH
QAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQEDPKAAVAALAKAAKVK
HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9009303; 10235622 [H]