| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026463
Identifier: 238026463
GI number: 238026463
Start: 869941
End: 871188
Strand: Direct
Name: 238026463
Synonym: bglu_1g08070
Alternate gene names: NA
Gene position: 869941-871188 (Clockwise)
Preceding gene: 238026459
Following gene: 238026464
Centisome position: 22.27
GC content: 65.46
Gene sequence:
>1248_bases ATGAAAGTTCGCGCGATGATGGGCGCGCTGTGCGCCGCAGGCCTGATGTTCGGTGCCGCCACGGCGCAGGCGGCCGAGGA CGTGACGGTGCTGCACTGGTGGACCTCGGGTGGCGAGTCGAAGGCAGTGGGCGTGCTGAAGGACGACCTGCAGAAGCAGG GCTACGTGTGGAAGGATTTCGCGGTGGCGGGCGGCGCGGGCGCGGCGGCCATGACCGCGCTGAAGACCAAGGTGATCAGC GGCGACGCACCGTCGGCCGCGCAGATCAAGGGTCCGCTGATTCAGGAATGGGCCGACCAGGGCGTGCTGGTCAACATCGA CTCGGTCGCGGGTGACTGGAAGCAGAACCTGCCGCCGGAAATCGACAAGATCATCAAGTACAAGGGCCACTACGTGGCGG CACCGTTCTCGGTGCATCGCGTGAACTGGCTGTACATCAACAAGGCCGCGCTCGACAAGGCGGGCGGCAAGGTGCCGACC AACTGGCCGGAATTCTTCCAGGTCGCCGACAAGATGAAGGCCGCCGGCATCCAGCCGATCGCGATGGGCGGCCAGCCGTG GCAGGATCTGACGCTGTGGGAGGACGTGGTGCTGTCCGAAGGCGCCGACTTCTACAAGAAGGCGCTCGTCGATCTCGACC AGGCGACGCTGACTTCGCCGAAGATGCTCGACGTGTTCAACACGGTGCGCAAGATCCAGGGCTACTTCGACCCGAGCCGC AACGGCCGCGACTGGAACCTGGCCACGGCGATGGTGATCAACGGCAAGGCCGGCATGCAGTTCATGGGCGACTGGGCCAA GGGCGAGTTCGAGAACGCCGGCAAGAAGTCGGGCAAGGACTACATCTGCGCGCCGGTGCCGGGCACCGCGAACGGCTACA CGTTCAACGTCGACTCGTTCGTGTTCTTCCAGCAGAAGGGTTCGGACAAGGCCACGCCGGGCCAGCTGGCGCTCGCCAAG ACCATCATGACGCCGGGCTTCCAGGAGCAGTTCAGCCTGCTGAAGGGCTCGATTCCGGTGCGCCTGGGCGTGAAGATGGA CAAGTTCGACGACTGCGCGAAGAAGTCCTACGCGGATGAGCAGGCCGCCCTGAAGGCGGGCGGCTACGTGCCCTCGCTGG CGCACGGCATGGCGCAGGGCGATGCCACCGCCGGCGCGATCTCGGACGTCGTGACCAAGTTCATGAACTCGCAGGAAGAT CCGAAGGCCGCGGTGGCGGCACTCGCCAAGGCCGCCAAGGTGAAGTAA
Upstream 100 bases:
>100_bases CATTCCGGTGGTGTCGTTATGCAGGTTCCCGAGCAAGCCGGCTTTCGCGGAGTCGAAAGCCTTACGAGTTGGTTCAATCC AATCTGGAGGAGATAAGTCA
Downstream 100 bases:
>100_bases TCGCGCAGCGGGCGGCGCCGGCAGGCTTCACGCCGGCACCGCCCGAAGCGAGGCAAGCGGGCTCTCGCGGGCCCGCGCCG CACCCCGATGCCGTGCGCCT
Product: sugar ABC transporter periplasmic protein
Products: NA
Alternate protein names: Immunogenic 39 kDa protein; P39 [H]
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED PKAAVAALAKAAKVK
Sequences:
>Translated_415_residues MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED PKAAVAALAKAAKVK >Mature_415_residues MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDFAVAGGAGAAAMTALKTKVIS GDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPEIDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPT NWPEFFQVADKMKAAGIQPIAMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSFVFFQQKGSDKATPGQLALAK TIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADEQAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQED PKAAVAALAKAAKVK
Specific function: Part of a binding-protein-dependent transport system for a sugar (Potential) [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44390; Mature: 44390
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE AVAGGAGAAAMTALKTKVISGDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPE EECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHCCCCEEEEEHHHCCCHHHCCCHH IDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPTNWPEFFQVADKMKAAGIQPI HHHHHHHCCCEEECCCEEEEEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE AMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCCCC NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSF CCCCCEEEEEEEEECCCCCHHHCCCCCCCHHCCCCCCCCCEEEECCCCCCCCEEEECCEE VFFQQKGSDKATPGQLALAKTIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADE EEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCHH QAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQEDPKAAVAALAKAAKVK HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKVRAMMGALCAAGLMFGAATAQAAEDVTVLHWWTSGGESKAVGVLKDDLQKQGYVWKDF CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEHHHHHHHHHCCCEEEEE AVAGGAGAAAMTALKTKVISGDAPSAAQIKGPLIQEWADQGVLVNIDSVAGDWKQNLPPE EECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHCCCCEEEEEHHHCCCHHHCCCHH IDKIIKYKGHYVAAPFSVHRVNWLYINKAALDKAGGKVPTNWPEFFQVADKMKAAGIQPI HHHHHHHCCCEEECCCEEEEEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE AMGGQPWQDLTLWEDVVLSEGADFYKKALVDLDQATLTSPKMLDVFNTVRKIQGYFDPSR ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHCCCCCCC NGRDWNLATAMVINGKAGMQFMGDWAKGEFENAGKKSGKDYICAPVPGTANGYTFNVDSF CCCCCEEEEEEEEECCCCCHHHCCCCCCCHHCCCCCCCCCEEEECCCCCCCCEEEECCEE VFFQQKGSDKATPGQLALAKTIMTPGFQEQFSLLKGSIPVRLGVKMDKFDDCAKKSYADE EEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCHH QAALKAGGYVPSLAHGMAQGDATAGAISDVVTKFMNSQEDPKAAVAALAKAAKVK HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9009303; 10235622 [H]