| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is rmlA1 [H]
Identifier: 238026392
GI number: 238026392
Start: 785451
End: 786344
Strand: Direct
Name: rmlA1 [H]
Synonym: bglu_1g07270
Alternate gene names: 238026392
Gene position: 785451-786344 (Clockwise)
Preceding gene: 238026391
Following gene: 238026393
Centisome position: 20.11
GC content: 63.76
Gene sequence:
>894_bases ATGGCACGCAAGGGCATCATTCTGGCCGGCGGTTCCGGCACCCGTCTGTACCCGATCACGCATGCGGTGTCGAAGCAGCT GCTGCCGGTGTACGACAAGCCGATGATCTACTATCCGCTGTCGACGCTGATGATCGCGGGAATCCGCGACGTGCTGATCA TCTCGACGCCGCAGGACACGCCGCGCTTCGAGGCCATGCTCGGCGACGGCGCGCAGTGGGGCATGAACATTTCCTACGCG GTGCAGCCGTCTCCGGACGGGCTCGCGCAGGCGTTCATCATCGGCCGCGAGTTCATCGGCCGCGATCCGTCGACGCTGAT TCTCGGTGACAACATTTTCTACGGCCACGATCTCGCCGGGCAGCTCGAGCGGGCCAACGCCCAGCAGAGCGGCGCGACGG TGTTCGCCTATCACGTTCAGGACCCGGAACGCTACGGCGTGGTCGAGTTCGACGCGTCGTTCCGCGCGTTGTCGATCGAG GAAAAGCCCGCCAAGCCGCGCTCGAACTATGCCGTGACCGGGCTGTACTTCTACGACAACCGCGTGTGCGACATTGCCGC CGACATCAAGCCGTCCGCGCGCGGCGAGCTGGAAATCACCGACGTGAACTCGCGCTATCTCGAAGACGACGCGCTCGACG TCGAGATCATGGGACGCGGCTACGCGTGGCTCGACACCGGCACGCATGACTCGCTGATCGAGGCCGCGACCTTCATCGCC ACGCTGCAGAAGCGCCAGGGGCTGATGGTGGCGTGTCCTGAAGAAATCGCCTATCGCAGGCAGTGGATCGACGCCGAGCA ACTGACGCGACTGGCCGAGCCGCTCGCGAAGAACGGCTACGGCCGCTATCTCAAAAACCTTCTCATGGATCAAGTGGTAT GGCCATCCAGGTAA
Upstream 100 bases:
>100_bases TGGTATCTCGATAACCAGCCGTGGGCCGCCGAGGTTGCCTCGGGCGAATATCGTAACTGGGTCGAGATGAACTACGCGCG GCGCGCGTGACGGAGGCGAG
Downstream 100 bases:
>100_bases CCGCCACGGCGCTTCCCGAAGTCAAGCTCATCGAGCCGAAGGTGTTCGGCGACGCGCGCGGGTTCTTCTACGAGAGCTTC ACCGCGCGCGAGTTCGCGGC
Product: glucose-1-phosphate thymidylyltransferase
Products: NA
Alternate protein names: G1P-TT 1; dTDP-glucose pyrophosphorylase 1; dTDP-glucose synthase 1 [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDVLIISTPQDTPRFEAMLGDGAQWGMNISYA VQPSPDGLAQAFIIGREFIGRDPSTLILGDNIFYGHDLAGQLERANAQQSGATVFAYHVQDPERYGVVEFDASFRALSIE EKPAKPRSNYAVTGLYFYDNRVCDIAADIKPSARGELEITDVNSRYLEDDALDVEIMGRGYAWLDTGTHDSLIEAATFIA TLQKRQGLMVACPEEIAYRRQWIDAEQLTRLAEPLAKNGYGRYLKNLLMDQVVWPSR
Sequences:
>Translated_297_residues MARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDVLIISTPQDTPRFEAMLGDGAQWGMNISYA VQPSPDGLAQAFIIGREFIGRDPSTLILGDNIFYGHDLAGQLERANAQQSGATVFAYHVQDPERYGVVEFDASFRALSIE EKPAKPRSNYAVTGLYFYDNRVCDIAADIKPSARGELEITDVNSRYLEDDALDVEIMGRGYAWLDTGTHDSLIEAATFIA TLQKRQGLMVACPEEIAYRRQWIDAEQLTRLAEPLAKNGYGRYLKNLLMDQVVWPSR >Mature_296_residues ARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDVLIISTPQDTPRFEAMLGDGAQWGMNISYAV QPSPDGLAQAFIIGREFIGRDPSTLILGDNIFYGHDLAGQLERANAQQSGATVFAYHVQDPERYGVVEFDASFRALSIEE KPAKPRSNYAVTGLYFYDNRVCDIAADIKPSARGELEITDVNSRYLEDDALDVEIMGRGYAWLDTGTHDSLIEAATFIAT LQKRQGLMVACPEEIAYRRQWIDAEQLTRLAEPLAKNGYGRYLKNLLMDQVVWPSR
Specific function: Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis [H]
COG id: COG1209
COG function: function code M; dTDP-glucose pyrophosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-1-phosphate thymidylyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI11761621, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI11761619, Length=248, Percent_Identity=25.4032258064516, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1788351, Length=288, Percent_Identity=72.5694444444444, Blast_Score=446, Evalue=1e-127, Organism=Escherichia coli, GI1790224, Length=285, Percent_Identity=64.2105263157895, Blast_Score=395, Evalue=1e-111, Organism=Escherichia coli, GI1787488, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI133931050, Length=182, Percent_Identity=24.7252747252747, Blast_Score=71, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6320148, Length=247, Percent_Identity=27.5303643724696, Blast_Score=87, Evalue=3e-18, Organism=Drosophila melanogaster, GI21355443, Length=245, Percent_Identity=23.265306122449, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24644084, Length=245, Percent_Identity=23.265306122449, Blast_Score=75, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005907 - InterPro: IPR005835 [H]
Pfam domain/function: PF00483 NTP_transferase [H]
EC number: =2.7.7.24 [H]
Molecular weight: Translated: 33076; Mature: 32945
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDVLIISTPQDT CCCCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCEEEECHHHHHHHCCCEEEEEECCCCC PRFEAMLGDGAQWGMNISYAVQPSPDGLAQAFIIGREFIGRDPSTLILGDNIFYGHDLAG CCHHHEECCCCHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCHH QLERANAQQSGATVFAYHVQDPERYGVVEFDASFRALSIEEKPAKPRSNYAVTGLYFYDN HHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECC RVCDIAADIKPSARGELEITDVNSRYLEDDALDVEIMGRGYAWLDTGTHDSLIEAATFIA EEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHH TLQKRQGLMVACPEEIAYRRQWIDAEQLTRLAEPLAKNGYGRYLKNLLMDQVVWPSR HHHHHCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ARKGIILAGGSGTRLYPITHAVSKQLLPVYDKPMIYYPLSTLMIAGIRDVLIISTPQDT CCCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCEEEECHHHHHHHCCCEEEEEECCCCC PRFEAMLGDGAQWGMNISYAVQPSPDGLAQAFIIGREFIGRDPSTLILGDNIFYGHDLAG CCHHHEECCCCHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCEEECCCCHH QLERANAQQSGATVFAYHVQDPERYGVVEFDASFRALSIEEKPAKPRSNYAVTGLYFYDN HHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECC RVCDIAADIKPSARGELEITDVNSRYLEDDALDVEIMGRGYAWLDTGTHDSLIEAATFIA EEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHH TLQKRQGLMVACPEEIAYRRQWIDAEQLTRLAEPLAKNGYGRYLKNLLMDQVVWPSR HHHHHCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7517391; 9097040; 9278503; 7517390 [H]