| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238026372
Identifier: 238026372
GI number: 238026372
Start: 761948
End: 763345
Strand: Reverse
Name: 238026372
Synonym: bglu_1g07060
Alternate gene names: NA
Gene position: 763345-761948 (Counterclockwise)
Preceding gene: 238026374
Following gene: 238026371
Centisome position: 19.54
GC content: 72.25
Gene sequence:
>1398_bases ATGACTGCCCGCCCGCCTCGCTCCCGCCGTCCGCACCGGTTCCTGGCCCGCTTCGTCGCGGTGTCGTGGCGCGACCTGGC GATGTCGTTCGGCCCGGCGCTGCTGCTCGGCGCCGCGGCGATCTGGCTCGCGATCCGGCTGATCCAGCCGGCACCGCCCA CCCATCTGGTGCTCTCGGCCGGCCCGCCCGGCAGCACCAACTGGATGGCCGCGCGCCGGTATCAGCGAATCCTCGCGAAG AACGGCGTGACGCTCGAGGTGCTGCCCTCGGAAGGCTCGGCGCAGAACCTGCAGCGCCTGCTCGATCCGCACGGGCGCGT CGACGTGGCGTTCGTGCAGAGCGGCGTCGATCAGAAGGACCGGCCCGACAGCCTGGTCTCGCTCGGCAGCGTCGGCTACC TGCCGCTCGCGATCCTCTACCGCGGCCCGCCCGTCGCGCGGCTCTCGCAGTTCGACGGCAAGCGGCTCGCGCTCGGCCCG GACGGCAGCGGCGCCCACGAGCTCGGCCTCGCGCTGCTGAAGCTCAACGGCATCGTGCCGGGCGGCGCGACGCGGCTGTT GCCGCTCGCGGGCGAGGACGCCGCGCGCGCGCTGATCGACGGCCGCATCGACGCGGCGTTCCTGTCGGGCGATTCGACCC AGATCCCGGTGATGGCCAAGCTGTTTCGCGCGCCGGGGGTGCGTTTCTATTCGTTCCCGCAGGCCGAGGCCTACACGCGG CGCTTCCCGTACCTGACCGACATCACGCTGCCGATGGGCGTGTACGACCCCGGCACCAACCTGCCGCCGGAGGATATCCA CACGCTGTCGCCCACCGTCGAGCTGATCGCGCGCGCCTCGCTGCATCCGGCGCTGTCGGACCTGCTGATCGAGGCCGCGC GCGAGGTGCACGGGCGCGCGACGATCCTGCAGCGCGCCGGCGAATTCCCGTCGCCCGTCACGCACGGCAGCTTCCCGCTG TCCGACGACGCGGCGCGCTACTACAAGTCCGGCAAGACCTTCCTCTACCGGCAGCTGCCGTTCTGGGTGGCGAGCCTCGT CGACCGGCTGCTGGTGATCGTGGTGCCGCTGGTGGTGGTATTGATCCCGGGGCTGCGCTTCGTGCCGATGCTGTACGGCT GGCGGGTCCGCTCACGGATCTACCGCTGGTACGGCGCGCTCATCACGCTGGAGCGCAGCGCGCTCGGCGAGCCGAGCGGG CGCGAACGGCTCGCGCTGCTCGAACGGCTCGACGACGTGGAGGATTCGGTCAACCGCATGAAGATGCCGCTCGCCTACGC CGGACAGTTCTACGTGCTGCGCGAGCACATCGGCTTCGTGCGCGAACGCCTGCTCGCGCAGGACGCGGCACCGCGCGATG CCGCGCCGGCCGGCGGCGCCGCCGCCGCGCCGGGTTGA
Upstream 100 bases:
>100_bases ATCGCGCGTTCCGCCCGCCGCAGGGCCGCCGAACTAGGGTACCATCCTCGCCGTCGCCACGGCCCGCGCGCCGCCCTCCC GCCCTTCGTATCGCACCGCG
Downstream 100 bases:
>100_bases GCCGGGCGGGCGAGGCTGAATCGGCTCGCCGCCGGCGCGCCGGAGGGCGCCCGCGCCGCGCCGTGATGCCCGAGCGGCCA GGGCGCCGCGATTGCTGCAA
Product: 2-hydroxychromene-2-carboxylate isomerase
Products: NA
Alternate protein names: TRAP Transporter Solute Receptor TAXI Family; TRAP-Type Transport System Periplasmic Component Protein; TRAP-Type Transport System Periplasmic Protein; Trap Transporter Solute Receptor Taxi Family Protein; TAXI Family TRAP Transporter Solute Receptor; Signal Peptide; TRAP-Type Transport System Periplasmic Component-Like; Trap Transporter Solute Receptor Taxi Family
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MTARPPRSRRPHRFLARFVAVSWRDLAMSFGPALLLGAAAIWLAIRLIQPAPPTHLVLSAGPPGSTNWMAARRYQRILAK NGVTLEVLPSEGSAQNLQRLLDPHGRVDVAFVQSGVDQKDRPDSLVSLGSVGYLPLAILYRGPPVARLSQFDGKRLALGP DGSGAHELGLALLKLNGIVPGGATRLLPLAGEDAARALIDGRIDAAFLSGDSTQIPVMAKLFRAPGVRFYSFPQAEAYTR RFPYLTDITLPMGVYDPGTNLPPEDIHTLSPTVELIARASLHPALSDLLIEAAREVHGRATILQRAGEFPSPVTHGSFPL SDDAARYYKSGKTFLYRQLPFWVASLVDRLLVIVVPLVVVLIPGLRFVPMLYGWRVRSRIYRWYGALITLERSALGEPSG RERLALLERLDDVEDSVNRMKMPLAYAGQFYVLREHIGFVRERLLAQDAAPRDAAPAGGAAAAPG
Sequences:
>Translated_465_residues MTARPPRSRRPHRFLARFVAVSWRDLAMSFGPALLLGAAAIWLAIRLIQPAPPTHLVLSAGPPGSTNWMAARRYQRILAK NGVTLEVLPSEGSAQNLQRLLDPHGRVDVAFVQSGVDQKDRPDSLVSLGSVGYLPLAILYRGPPVARLSQFDGKRLALGP DGSGAHELGLALLKLNGIVPGGATRLLPLAGEDAARALIDGRIDAAFLSGDSTQIPVMAKLFRAPGVRFYSFPQAEAYTR RFPYLTDITLPMGVYDPGTNLPPEDIHTLSPTVELIARASLHPALSDLLIEAAREVHGRATILQRAGEFPSPVTHGSFPL SDDAARYYKSGKTFLYRQLPFWVASLVDRLLVIVVPLVVVLIPGLRFVPMLYGWRVRSRIYRWYGALITLERSALGEPSG RERLALLERLDDVEDSVNRMKMPLAYAGQFYVLREHIGFVRERLLAQDAAPRDAAPAGGAAAAPG >Mature_464_residues TARPPRSRRPHRFLARFVAVSWRDLAMSFGPALLLGAAAIWLAIRLIQPAPPTHLVLSAGPPGSTNWMAARRYQRILAKN GVTLEVLPSEGSAQNLQRLLDPHGRVDVAFVQSGVDQKDRPDSLVSLGSVGYLPLAILYRGPPVARLSQFDGKRLALGPD GSGAHELGLALLKLNGIVPGGATRLLPLAGEDAARALIDGRIDAAFLSGDSTQIPVMAKLFRAPGVRFYSFPQAEAYTRR FPYLTDITLPMGVYDPGTNLPPEDIHTLSPTVELIARASLHPALSDLLIEAAREVHGRATILQRAGEFPSPVTHGSFPLS DDAARYYKSGKTFLYRQLPFWVASLVDRLLVIVVPLVVVLIPGLRFVPMLYGWRVRSRIYRWYGALITLERSALGEPSGR ERLALLERLDDVEDSVNRMKMPLAYAGQFYVLREHIGFVRERLLAQDAAPRDAAPAGGAAAAPG
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50724; Mature: 50593
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARPPRSRRPHRFLARFVAVSWRDLAMSFGPALLLGAAAIWLAIRLIQPAPPTHLVLSA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC GPPGSTNWMAARRYQRILAKNGVTLEVLPSEGSAQNLQRLLDPHGRVDVAFVQSGVDQKD CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEHHCCCCCCC RPDSLVSLGSVGYLPLAILYRGPPVARLSQFDGKRLALGPDGSGAHELGLALLKLNGIVP CCHHHHHHCCCCHHHHHEEECCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCC GGATRLLPLAGEDAARALIDGRIDAAFLSGDSTQIPVMAKLFRAPGVRFYSFPQAEAYTR CCCCEEEEECCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEECCCHHHHHH RFPYLTDITLPMGVYDPGTNLPPEDIHTLSPTVELIARASLHPALSDLLIEAAREVHGRA CCCCEEEEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TILQRAGEFPSPVTHGSFPLSDDAARYYKSGKTFLYRQLPFWVASLVDRLLVIVVPLVVV HHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH LIPGLRFVPMLYGWRVRSRIYRWYGALITLERSALGEPSGRERLALLERLDDVEDSVNRM HHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHH KMPLAYAGQFYVLREHIGFVRERLLAQDAAPRDAAPAGGAAAAPG HCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TARPPRSRRPHRFLARFVAVSWRDLAMSFGPALLLGAAAIWLAIRLIQPAPPTHLVLSA CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC GPPGSTNWMAARRYQRILAKNGVTLEVLPSEGSAQNLQRLLDPHGRVDVAFVQSGVDQKD CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEHHCCCCCCC RPDSLVSLGSVGYLPLAILYRGPPVARLSQFDGKRLALGPDGSGAHELGLALLKLNGIVP CCHHHHHHCCCCHHHHHEEECCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCC GGATRLLPLAGEDAARALIDGRIDAAFLSGDSTQIPVMAKLFRAPGVRFYSFPQAEAYTR CCCCEEEEECCCHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEECCCHHHHHH RFPYLTDITLPMGVYDPGTNLPPEDIHTLSPTVELIARASLHPALSDLLIEAAREVHGRA CCCCEEEEECCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH TILQRAGEFPSPVTHGSFPLSDDAARYYKSGKTFLYRQLPFWVASLVDRLLVIVVPLVVV HHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH LIPGLRFVPMLYGWRVRSRIYRWYGALITLERSALGEPSGRERLALLERLDDVEDSVNRM HHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHH KMPLAYAGQFYVLREHIGFVRERLLAQDAAPRDAAPAGGAAAAPG HCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA