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The map label for this gene is yggS [C]

Identifier: 238026281

GI number: 238026281

Start: 647402

End: 648112

Strand: Reverse

Name: yggS [C]

Synonym: bglu_1g06140

Alternate gene names: 238026281

Gene position: 648112-647402 (Counterclockwise)

Preceding gene: 238026282

Following gene: 238026280

Centisome position: 16.59

GC content: 74.12

Gene sequence:

>711_bases
ATGCTCGATCTCGCCGCCCGTCTCGCCTCCGTCCACCGCCGCATCGACGACGCGGCCCGCTCCGCCGGCCGCGCGCCGGG
CGACGTCGCGCTGCTCGCGGTGTCGAAGACGTTCCCGGCCGAGGCCGTGCGCGCCGCGCACGCGGCCGGCCAGCGTGCGT
TCGGCGAGAACTACGTGCAGGAATCGCTCGACAAGATCGCCGCGCTCGCCGATCTGCGCGCCTCGCTCGAGTGGCATTTC
ATCGGGCCGCTGCAGTCGAACAAGACGCGCGCGGTGGCCGAGCGGTTCGACTGGGTGCATTCGGTCGACCGCCTGAAGAT
CGCGCAGCGCCTGGCCGAGCAACGCCCCGCGCAGCTGCCGCCGCTCAATGTCTGCGTGCAGGTCAACGTCAGCGGCGAGG
CGACCAAGAGCGGCGTCGCGCCGGACGAGGTCGCCGCGCTCGCGCAGGCGGTCGCGGCGCTGCCGGCGCTGCGGCTGCGC
GGGCTGATGGCGATCCCCGAACCGGCCGGCGACCTCGCGGCGCAGCGCGCCCCGCACCGCAGGCTGCGCGAGCTGTACGA
CGCGCTGCGGGCCGGCGGCCTCGCGCTCGACACCTTGTCGATGGGCATGTCGGCCGACCTCGAGGCGGCGGTGCTCGAAG
GCGCGACGATCGTCCGGATCGGCACCGCGATCTTCGGCGCCCGCGATTATTCGACGCCGAGCGCGTCCTGA

Upstream 100 bases:

>100_bases
CGCCTCGCCGCGTCCGGCCCGCCCGCGGCCGGACGCGCTCCGTATAATGGACCGTGCCGCGGTCGCGCGGCCCCTTTTCG
TCTTTCGACCTCCTTCGCGT

Downstream 100 bases:

>100_bases
CCCTTCGCTTTTCCTCCCAACCATCATGAAAATTGCATTCATCGGCGGCGGCAACATGGCCTCCGCTCTGATCGGCGGCA
TCGTCAAGCGCGGCACGGCC

Product: Alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MLDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQESLDKIAALADLRASLEWHF
IGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLPPLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLR
GLMAIPEPAGDLAAQRAPHRRLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYSTPSAS

Sequences:

>Translated_236_residues
MLDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQESLDKIAALADLRASLEWHF
IGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLPPLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLR
GLMAIPEPAGDLAAQRAPHRRLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYSTPSAS
>Mature_236_residues
MLDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQESLDKIAALADLRASLEWHF
IGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLPPLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLR
GLMAIPEPAGDLAAQRAPHRRLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYSTPSAS

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=248, Percent_Identity=40.3225806451613, Blast_Score=139, Evalue=1e-33,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=57.3275862068966, Blast_Score=259, Evalue=2e-70,
Organism=Caenorhabditis elegans, GI17533025, Length=227, Percent_Identity=35.2422907488987, Blast_Score=121, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=240, Percent_Identity=35.8333333333333, Blast_Score=115, Evalue=7e-27,
Organism=Drosophila melanogaster, GI45550861, Length=257, Percent_Identity=37.7431906614786, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24967; Mature: 24967

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESLDKIAALADLRASLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLP
HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLRGLMAIPEPAGDLAAQRAPHR
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHH
RLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYSTPSAS
HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESLDKIAALADLRASLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLP
HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLRGLMAIPEPAGDLAAQRAPHR
CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHH
RLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYSTPSAS
HHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHCCCHHEEHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]