Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238026219

Identifier: 238026219

GI number: 238026219

Start: 580233

End: 580655

Strand: Direct

Name: 238026219

Synonym: bglu_1g05500

Alternate gene names: NA

Gene position: 580233-580655 (Clockwise)

Preceding gene: 238026218

Following gene: 238026221

Centisome position: 14.85

GC content: 65.48

Gene sequence:

>423_bases
ATGACGTATCTCTGGGTCAAGACCTTCCACATCGTGCTGATCGCCGCCTGGTTCGCGGGGCTGTTCTATCTGCCGCGCAT
CTACGTGAACCTCGCGATGGAGAGCGATCCCGGCGCGGTGCGCCGGCTGCTCGCGATGGCGCGCAAGCTGTTCCGCTTCA
TGAGTTTCATCGCCGTGCCGGCGCTCGCCTGCGGGCTCTGGCTCTGGCTCGTCGCCGGCGTCGGGCGCGGGCAGGGGTGG
ATTCACGCGAAGCTGACGATCGTCCTGCTGCTGATCGTCTATCACGTCTATTGCGGGCATCTGCTGCGCGTGTTCGAGCG
CGGCGAGAACCGCCGCTCCGATCGCTGGTATCGCTTCTTCAACGAACTGCCGGTGCTCGGCATGCTCGGCGCCGTCGCGC
TGGCCGTGATCAAGCCGTTCTGA

Upstream 100 bases:

>100_bases
CTCGGGCACGGCGAAGGGCGGCAATGAACACGCGGCGGCCGGTGCCGGCCGCCGCGGCCACGGGCCGGCGCGACCCGGCC
ACCGAAGGACGGGCTATTCG

Downstream 100 bases:

>100_bases
GCGGGGCTTCGCGCCGCCGCGCGCGCTCGGCGATAGCGGCCGCGCCATCGTCGCTGGGCGGCATCATCGCCGCCGCCCGG
CGGCGTCCTCAGGCGGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGW
IHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF

Sequences:

>Translated_140_residues
MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGW
IHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF
>Mature_139_residues
TYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGWI
HAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 16128; Mature: 15997

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ALACGLWLWLVAGVGRGQGWIHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFF
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NELPVLGMLGAVALAVIKPF
HHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ALACGLWLWLVAGVGRGQGWIHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFF
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NELPVLGMLGAVALAVIKPF
HHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]