| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026219
Identifier: 238026219
GI number: 238026219
Start: 580233
End: 580655
Strand: Direct
Name: 238026219
Synonym: bglu_1g05500
Alternate gene names: NA
Gene position: 580233-580655 (Clockwise)
Preceding gene: 238026218
Following gene: 238026221
Centisome position: 14.85
GC content: 65.48
Gene sequence:
>423_bases ATGACGTATCTCTGGGTCAAGACCTTCCACATCGTGCTGATCGCCGCCTGGTTCGCGGGGCTGTTCTATCTGCCGCGCAT CTACGTGAACCTCGCGATGGAGAGCGATCCCGGCGCGGTGCGCCGGCTGCTCGCGATGGCGCGCAAGCTGTTCCGCTTCA TGAGTTTCATCGCCGTGCCGGCGCTCGCCTGCGGGCTCTGGCTCTGGCTCGTCGCCGGCGTCGGGCGCGGGCAGGGGTGG ATTCACGCGAAGCTGACGATCGTCCTGCTGCTGATCGTCTATCACGTCTATTGCGGGCATCTGCTGCGCGTGTTCGAGCG CGGCGAGAACCGCCGCTCCGATCGCTGGTATCGCTTCTTCAACGAACTGCCGGTGCTCGGCATGCTCGGCGCCGTCGCGC TGGCCGTGATCAAGCCGTTCTGA
Upstream 100 bases:
>100_bases CTCGGGCACGGCGAAGGGCGGCAATGAACACGCGGCGGCCGGTGCCGGCCGCCGCGGCCACGGGCCGGCGCGACCCGGCC ACCGAAGGACGGGCTATTCG
Downstream 100 bases:
>100_bases GCGGGGCTTCGCGCCGCCGCGCGCGCTCGGCGATAGCGGCCGCGCCATCGTCGCTGGGCGGCATCATCGCCGCCGCCCGG CGGCGTCCTCAGGCGGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGW IHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF
Sequences:
>Translated_140_residues MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGW IHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF >Mature_139_residues TYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVPALACGLWLWLVAGVGRGQGWI HAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFFNELPVLGMLGAVALAVIKPF
Specific function: Unknown
COG id: COG1981
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0093 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014351 - InterPro: IPR008457 - InterPro: IPR005265 [H]
Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]
EC number: NA
Molecular weight: Translated: 16128; Mature: 15997
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ALACGLWLWLVAGVGRGQGWIHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH NELPVLGMLGAVALAVIKPF HHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure TYLWVKTFHIVLIAAWFAGLFYLPRIYVNLAMESDPGAVRRLLAMARKLFRFMSFIAVP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ALACGLWLWLVAGVGRGQGWIHAKLTIVLLLIVYHVYCGHLLRVFERGENRRSDRWYRFF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH NELPVLGMLGAVALAVIKPF HHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]