Click here to switch to the map view.

The map label for this gene is exbD1 [H]

Identifier: 238026214

GI number: 238026214

Start: 573683

End: 574150

Strand: Direct

Name: exbD1 [H]

Synonym: bglu_1g05450

Alternate gene names: 238026214

Gene position: 573683-574150 (Clockwise)

Preceding gene: 238026213

Following gene: 238026215

Centisome position: 14.69

GC content: 76.07

Gene sequence:

>468_bases
GTGGCATTCGGCGGACTCGATCCTCGCGAACCGGCCGCGCCGATGGCCGAGATCAACATGACGCCGCTGATCGACGTGAT
GCTGGTGCTGCTGGTGATCTTCATCATCACCGCACCGCTGCTCACGCACGCGATCCGGCTCGACCTGCCGAAGGCCGCCG
CGGCGCCCGCGCGCGAGCGGCCCGACACGATCACGCTGTCGATCGACGCCGACGGCCGGCTGTTCTGGGGCGCCGCGCCC
ATCGGCGAGGCGGCGCTGGCCGGCCGGTTTCGCGCCGCGGTCGCGCGCGGCGGCACGCCCGAGCTGCACGTGCGTGCCGC
CGCCGCTGCGCGCTACGACACGATCGCGCGCGTGATGAGCGCCGCGCAGGCGGCCGGGCTGACGCGCATCGGTTTCGTGA
CCGAGCCGGACCCGGGCGGCGCGCCGCCCGGGCCGGCGAGGGCGGCGCCGCTCGCGCCTGGCCGCTGA

Upstream 100 bases:

>100_bases
GGTGCGGCAGCTCGTCGAGGATCTCGACGGGTTCGCGCGCGACCTGCACGCATTCGCCGGCGGCGCGCCCGAGCGCGACG
CGCGGGCCTGAGGGCGCACC

Downstream 100 bases:

>100_bases
GCCGGCCGGGCGCCGCCCGGCTCGCGCGCCGTGCCCGCCCGCATCCGGCCGCGCCTGTGGCCGGCGTTTGCCGTCCGGCG
CCGCGATTGCCGCCCGAGCC

Product: putative transport-related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAFGGLDPREPAAPMAEINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKAAAAPARERPDTITLSIDADGRLFWGAAP
IGEAALAGRFRAAVARGGTPELHVRAAAAARYDTIARVMSAAQAAGLTRIGFVTEPDPGGAPPGPARAAPLAPGR

Sequences:

>Translated_155_residues
MAFGGLDPREPAAPMAEINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKAAAAPARERPDTITLSIDADGRLFWGAAP
IGEAALAGRFRAAVARGGTPELHVRAAAAARYDTIARVMSAAQAAGLTRIGFVTEPDPGGAPPGPARAAPLAPGR
>Mature_154_residues
AFGGLDPREPAAPMAEINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKAAAAPARERPDTITLSIDADGRLFWGAAPI
GEAALAGRFRAAVARGGTPELHVRAAAAARYDTIARVMSAAQAAGLTRIGFVTEPDPGGAPPGPARAAPLAPGR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=122, Percent_Identity=36.0655737704918, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15944; Mature: 15813

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDPREPAAPMAEINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKAAAAPARER
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC
PDTITLSIDADGRLFWGAAPIGEAALAGRFRAAVARGGTPELHVRAAAAARYDTIARVMS
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTEPDPGGAPPGPARAAPLAPGR
HHHHCCCEEECEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDPREPAAPMAEINMTPLIDVMLVLLVIFIITAPLLTHAIRLDLPKAAAAPARER
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC
PDTITLSIDADGRLFWGAAPIGEAALAGRFRAAVARGGTPELHVRAAAAARYDTIARVMS
CCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTEPDPGGAPPGPARAAPLAPGR
HHHHCCCEEECEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]