| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is aroE [H]
Identifier: 238026183
GI number: 238026183
Start: 542180
End: 543049
Strand: Direct
Name: aroE [H]
Synonym: bglu_1g05140
Alternate gene names: 238026183
Gene position: 542180-543049 (Clockwise)
Preceding gene: 238026182
Following gene: 238026184
Centisome position: 13.88
GC content: 74.83
Gene sequence:
>870_bases ATGAGCGAATCCGTCCAGCATCCGGCCCCGCGCGACCGCTACGTCGTGATCGGCAATCCGATCGCGCACAGCAAGTCGCC CGCGATCCACGCCCGCTTCGCCGCGCAGACCGGCGAGGCGGTCGACTACGCGCACCGCCTCGCGCCGCTCGACGGCTTCG CGGCGTCGGTGCGCGAGTTCATCGCCGAGGGAGGGCGCGGCGCGAACGTGACCGTGCCGTTCAAGCTCGAGGCGCATGCG CTCGCCGACACGCTGTCGCCGCGCGCGGCGGCGGCGGGCGCCGTCAACACCCTGCGCTTCGACGCCGACGGCGCGATCCA CGGCGACAACACCGACGGTGCCGGCCTCGTGCGCGACATCGAGCACAATCTCGGCGTGTCGCTGGCCGGCGCGCGGATCC TGCTGCTCGGCGCGGGCGGCGCCGCGCGCGGCGTGGTGCTGCCGATGCTCGATCGCGGCCCGCTGTCGATCACGATCTCG AACCGCACCGCGAGCCGCGCCGAGCAGCTGGCCGGCCAGTTCATGCAGGCCGCGCACGACGCGGGCTGTGCGCTGGCGGG CGGCGGCGCGGCGGTCGTCGAACGGCGTGCCTACGACGTGATCGTCAACGCCACGGCCGGCAGCCTGGATGCGGCGCTGC CCGAGTGCGACCCGGCCGCGTTCGGCACCGGTACGCTCGCCTACGACATGATGTACGGCACGCAGCCGACCGTGTTCATG CAGCACGCCGCCGCGCTCGGCGCGCGCACGGCCGACGGGCTCGGCATGCTGGTCGAGCAGGCCGCCGAGTCGTTCTGGCT GTGGCGCGGCGTGCGTCCCGACGGCGCGCCCGTGCTGGCGGCGCTGCGCGATGCGCTCGCCGCGGCCTGA
Upstream 100 bases:
>100_bases GAGGCCGGAGCGCCGGCCGCCGGCACCGATGCCGGTGCGGCTGGCAGCGGCGAGGGCGACACGAAATGAACCCGAACCGC TCCTCGCGGGCGACGGCACG
Downstream 100 bases:
>100_bases ATCCGGCGCCGGCATGGCCGGGCCGCGCGCATGGTGATCCCGTTCGGCACCGGCCGGACCCGCGCCGGCAGGCCTCGGGC GCGCCGGCACGGGCTGGCGC
Product: shikimate 5-dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSESVQHPAPRDRYVVIGNPIAHSKSPAIHARFAAQTGEAVDYAHRLAPLDGFAASVREFIAEGGRGANVTVPFKLEAHA LADTLSPRAAAAGAVNTLRFDADGAIHGDNTDGAGLVRDIEHNLGVSLAGARILLLGAGGAARGVVLPMLDRGPLSITIS NRTASRAEQLAGQFMQAAHDAGCALAGGGAAVVERRAYDVIVNATAGSLDAALPECDPAAFGTGTLAYDMMYGTQPTVFM QHAAALGARTADGLGMLVEQAAESFWLWRGVRPDGAPVLAALRDALAAA
Sequences:
>Translated_289_residues MSESVQHPAPRDRYVVIGNPIAHSKSPAIHARFAAQTGEAVDYAHRLAPLDGFAASVREFIAEGGRGANVTVPFKLEAHA LADTLSPRAAAAGAVNTLRFDADGAIHGDNTDGAGLVRDIEHNLGVSLAGARILLLGAGGAARGVVLPMLDRGPLSITIS NRTASRAEQLAGQFMQAAHDAGCALAGGGAAVVERRAYDVIVNATAGSLDAALPECDPAAFGTGTLAYDMMYGTQPTVFM QHAAALGARTADGLGMLVEQAAESFWLWRGVRPDGAPVLAALRDALAAA >Mature_288_residues SESVQHPAPRDRYVVIGNPIAHSKSPAIHARFAAQTGEAVDYAHRLAPLDGFAASVREFIAEGGRGANVTVPFKLEAHAL ADTLSPRAAAAGAVNTLRFDADGAIHGDNTDGAGLVRDIEHNLGVSLAGARILLLGAGGAARGVVLPMLDRGPLSITISN RTASRAEQLAGQFMQAAHDAGCALAGGGAAVVERRAYDVIVNATAGSLDAALPECDPAAFGTGTLAYDMMYGTQPTVFMQ HAAALGARTADGLGMLVEQAAESFWLWRGVRPDGAPVLAALRDALAAA
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789675, Length=278, Percent_Identity=47.4820143884892, Blast_Score=226, Evalue=1e-60, Organism=Escherichia coli, GI1787983, Length=271, Percent_Identity=29.520295202952, Blast_Score=100, Evalue=9e-23, Organism=Saccharomyces cerevisiae, GI6320332, Length=168, Percent_Identity=34.5238095238095, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 29636; Mature: 29505
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESVQHPAPRDRYVVIGNPIAHSKSPAIHARFAAQTGEAVDYAHRLAPLDGFAASVREF CCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEHHCCCHHHHHHHHHCCCCHHHHHHHHH IAEGGRGANVTVPFKLEAHALADTLSPRAAAAGAVNTLRFDADGAIHGDNTDGAGLVRDI HHCCCCCCEEEEEEEECHHHHHHHCCCHHHHCCCCEEEEECCCCCEECCCCCCCHHHHHH EHNLGVSLAGARILLLGAGGAARGVVLPMLDRGPLSITISNRTASRAEQLAGQFMQAAHD HHHCCEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH AGCALAGGGAAVVERRAYDVIVNATAGSLDAALPECDPAAFGTGTLAYDMMYGTQPTVFM CCCEEECCCHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH QHAAALGARTADGLGMLVEQAAESFWLWRGVRPDGAPVLAALRDALAAA HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SESVQHPAPRDRYVVIGNPIAHSKSPAIHARFAAQTGEAVDYAHRLAPLDGFAASVREF CCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEHHCCCHHHHHHHHHCCCCHHHHHHHHH IAEGGRGANVTVPFKLEAHALADTLSPRAAAAGAVNTLRFDADGAIHGDNTDGAGLVRDI HHCCCCCCEEEEEEEECHHHHHHHCCCHHHHCCCCEEEEECCCCCEECCCCCCCHHHHHH EHNLGVSLAGARILLLGAGGAARGVVLPMLDRGPLSITISNRTASRAEQLAGQFMQAAHD HHHCCEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH AGCALAGGGAAVVERRAYDVIVNATAGSLDAALPECDPAAFGTGTLAYDMMYGTQPTVFM CCCEEECCCHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHH QHAAALGARTADGLGMLVEQAAESFWLWRGVRPDGAPVLAALRDALAAA HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA