| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is rnb [H]
Identifier: 238026182
GI number: 238026182
Start: 540016
End: 542148
Strand: Direct
Name: rnb [H]
Synonym: bglu_1g05130
Alternate gene names: 238026182
Gene position: 540016-542148 (Clockwise)
Preceding gene: 238026181
Following gene: 238026183
Centisome position: 13.82
GC content: 70.37
Gene sequence:
>2133_bases GTGAACGTTTTTTTCGAGGAATCGGGCAGTTTCAAGGCGGGTAGCGTGCTGTCGCGCCAGGGCGACGCGTTTCAGGTCGA GTTGCCGGGCGGGCGGCGCGCCAAGGTGCGCGCCAAGGATGTGCTGATCGAATTCGACAAGCCGGCCGCCGGCGAGCTGA TGCAGCAGGCCGATGCGGCCGCGCAGCAGATCGATCTCGATTTTCTGTGGGAATGCGCGCCGCAGGAGGAATTCGCCTAC GGCACGCTCGCCGACGAGTATTTCGGCAGCGGCTATGGGCCCGTCGAGCGCGCCGCGCTGGTGCTGCGCATGCACGGCTC GCCCGTCTATTTCCGCCGCAAGGGGCGTGGCCAGTACCAGCGCGCGCCCGAGGAGCAGCTCAAGATGGCGCTCGCCTCGC TCGAGCGCAAGCGCCAGCAGGCGCTGGTGCAGGCGGGCTACGAGGAGGAGCTGAAGGCGCGCCGGCTGCCGGCCGCGTTC GAGGGCAAGGCGCTCGCGCTGCTGACCCGGCCGGACAAGAACTCCATCGAATACAAGGCGCTCGACGCGGCCGCGCTCGC GCTCGGCGTGTCGCCGGCACGGCTGATGCTCGACTGCGGCGGGGTGGCCTCGGCGCGCGCGCTGCACGAGGCGCGCTTTC TCGCCGAGCATTTCCCGCACGGCACGGGCTTCCCGCCCGTGACGGTCGGCCCGCTGCCCGAGGACCTGCCGCGTGCCGGC GTCGACGCGTTCTCGATCGACGACGTGACCACCACCGAGATCGACGATGCGTTCTCGGTCGAGCACCTGCCCGAGAACCG GGTGCGGATCGGCATCCACATCGCGGCGCCGGCGCTCGGCATCACGCGCGGCGACGAGATCGACGCGATCGCGCGCGCGC GGCTGTCCACGGTCTACATGCCCGGCGACAAGATCACCATGCTGCCCGACGACGTGGTCGAGGTGTTCACGCTGAAGGAG GGCGGTTATCGCCCGGCGCTGTCGCTCTACATCATCGTCGATCGCGCGACGCAGGACATCGTCGCCAACGAGACGCGCGC CGAGTACGTGTTCGTCAAGAGCAACCTGCGCCACAACACGCTCGAGGAAGTGGTCACCGAGGAAACGCTCGCGGCCGGCA CCGGCGACTACCCGCACAAGGACGACATCGCGGTGCTGTGGCCGCTCGCGCAGGCGCTGTTCGAGAAGCGCCAGGTGGCG CGCGCCGGCTACGGCTTGAAGCGCGAGGTGCAGCGCAATACCGACTACAACTTCTATGTCGAGGGCGAGCACATCTCGAT CACGCCGCGCCGGCGCGGTTCGCCGCTCGACCTGATCGTCTCGGAGCTCGCGATCCTCGCCAACTCGACCTGGGGCGCGT TCCTGCACGACCACACGGTGCCCGGCATCTACCGCTCGCAGCGCGCGCTGGGCGCGCCGACCGGGCCGAAGCGCACGCGC ATGCAGACCAGCGCCGCGCCGCACGAGGGCCTGGGCGTCGCGCAGTACGCCTGGAGCACCTCGCCGCTGCGCCGCTACGT CGATCTCGTCAACCAGTGGCAACTGCTCGCCTGCGTGCAGCACGGCGTGACCGCCAAGCTGGCCGCGCCGTTCAAGCCGA AGGACGCCGACCTCTACGCGGTGGTGCAGGGCTTTGACGATACCTACACGGCCTATGCCGACCACCAGCGCCGCATGGAG TATTTCTGGTGCCTGCGCTGGCTGCGTCAGGAGAACCGCCGGCAGGTGGTCGCCGCGGTCGTCAAGGGCGACCTGGTGCG GCTCGAGGAGGTGCCGTTGCTGCTGCACGTGCCGGGGCTCGGCGTGCATGCGCGCGGCACGCGCGTGCTGCTCGACGTGA TGTCGATCGACGAGCTGACGATCGAGGCCTCGGTGCGGCTGCTCAACGTGCTCGACGCGCCGAGCGCGTCGGACACCGAG GCGGCCGACGAGGAAGGCGAGGGCGACGAGACATTGCTGGACGCGCCCGACGATTCGGCCGAGAGCGAGGCCGAAGCGCT CGCCGAGTCGGGCGCGGCCGAGGGCGAGGCCGGAGCGCTCGCCGAGTCGGGCGCGGCCGAGGGCGAGGCCGGAGCGCCGG CCGCCGGCACCGATGCCGGTGCGGCTGGCAGCGGCGAGGGCGACACGAAATGA
Upstream 100 bases:
>100_bases CGGCCCGACGGGCGCGGCCGGCCGCTGACGACGCAATTCAATCCAATCCGGACGAGGGCGCCGCGAGGCGGCGCCGGACA GTCTCAACGAGAGTAACCGA
Downstream 100 bases:
>100_bases ACCCGAACCGCTCCTCGCGGGCGACGGCACGATGAGCGAATCCGTCCAGCATCCGGCCCCGCGCGACCGCTACGTCGTGA TCGGCAATCCGATCGCGCAC
Product: Ribonuclease II
Products: NA
Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAAGELMQQADAAAQQIDLDFLWECAPQEEFAY GTLADEYFGSGYGPVERAALVLRMHGSPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAGYEEELKARRLPAAF EGKALALLTRPDKNSIEYKALDAAALALGVSPARLMLDCGGVASARALHEARFLAEHFPHGTGFPPVTVGPLPEDLPRAG VDAFSIDDVTTTEIDDAFSVEHLPENRVRIGIHIAAPALGITRGDEIDAIARARLSTVYMPGDKITMLPDDVVEVFTLKE GGYRPALSLYIIVDRATQDIVANETRAEYVFVKSNLRHNTLEEVVTEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHISITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRALGAPTGPKRTR MQTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRME YFWCLRWLRQENRRQVVAAVVKGDLVRLEEVPLLLHVPGLGVHARGTRVLLDVMSIDELTIEASVRLLNVLDAPSASDTE AADEEGEGDETLLDAPDDSAESEAEALAESGAAEGEAGALAESGAAEGEAGAPAAGTDAGAAGSGEGDTK
Sequences:
>Translated_710_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAAGELMQQADAAAQQIDLDFLWECAPQEEFAY GTLADEYFGSGYGPVERAALVLRMHGSPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAGYEEELKARRLPAAF EGKALALLTRPDKNSIEYKALDAAALALGVSPARLMLDCGGVASARALHEARFLAEHFPHGTGFPPVTVGPLPEDLPRAG VDAFSIDDVTTTEIDDAFSVEHLPENRVRIGIHIAAPALGITRGDEIDAIARARLSTVYMPGDKITMLPDDVVEVFTLKE GGYRPALSLYIIVDRATQDIVANETRAEYVFVKSNLRHNTLEEVVTEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHISITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRALGAPTGPKRTR MQTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRME YFWCLRWLRQENRRQVVAAVVKGDLVRLEEVPLLLHVPGLGVHARGTRVLLDVMSIDELTIEASVRLLNVLDAPSASDTE AADEEGEGDETLLDAPDDSAESEAEALAESGAAEGEAGALAESGAAEGEAGAPAAGTDAGAAGSGEGDTK >Mature_710_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAAGELMQQADAAAQQIDLDFLWECAPQEEFAY GTLADEYFGSGYGPVERAALVLRMHGSPVYFRRKGRGQYQRAPEEQLKMALASLERKRQQALVQAGYEEELKARRLPAAF EGKALALLTRPDKNSIEYKALDAAALALGVSPARLMLDCGGVASARALHEARFLAEHFPHGTGFPPVTVGPLPEDLPRAG VDAFSIDDVTTTEIDDAFSVEHLPENRVRIGIHIAAPALGITRGDEIDAIARARLSTVYMPGDKITMLPDDVVEVFTLKE GGYRPALSLYIIVDRATQDIVANETRAEYVFVKSNLRHNTLEEVVTEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHISITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRALGAPTGPKRTR MQTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADHQRRME YFWCLRWLRQENRRQVVAAVVKGDLVRLEEVPLLLHVPGLGVHARGTRVLLDVMSIDELTIEASVRLLNVLDAPSASDTE AADEEGEGDETLLDAPDDSAESEAEALAESGAAEGEAGALAESGAAEGEAGAPAAGTDAGAAGSGEGDTK
Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787542, Length=367, Percent_Identity=27.2479564032698, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011804 [H]
Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: =3.1.13.1 [H]
Molecular weight: Translated: 77214; Mature: 77214
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAAGELMQQADAA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH AQQIDLDFLWECAPQEEFAYGTLADEYFGSGYGPVERAALVLRMHGSPVYFRRKGRGQYQ HHHCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHEEEEEEECCCEEEEEECCCCCCC RAPEEQLKMALASLERKRQQALVQAGYEEELKARRLPAAFEGKALALLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEHH LDAAALALGVSPARLMLDCGGVASARALHEARFLAEHFPHGTGFPPVTVGPLPEDLPRAG HHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHCC VDAFSIDDVTTTEIDDAFSVEHLPENRVRIGIHIAAPALGITRGDEIDAIARARLSTVYM CCEEECCCCEECCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCCHHHHHHHHHEEEEE PGDKITMLPDDVVEVFTLKEGGYRPALSLYIIVDRATQDIVANETRAEYVFVKSNLRHNT CCCEEEECCHHHEEEEEECCCCCCCEEEEEEEEECCCHHHHCCCCCCEEEEEECCCCHHH LEEVVTEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHISITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRALGAPTGPKRTR ECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCHHC MQTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYA CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEE VVQGFDDTYTAYADHQRRMEYFWCLRWLRQENRRQVVAAVVKGDLVRLEEVPLLLHVPGL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCC GVHARGTRVLLDVMSIDELTIEASVRLLNVLDAPSASDTEAADEEGEGDETLLDAPDDSA CEECCCCEEEEEEHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCC ESEAEALAESGAAEGEAGALAESGAAEGEAGAPAAGTDAGAAGSGEGDTK HHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFDKPAAGELMQQADAA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH AQQIDLDFLWECAPQEEFAYGTLADEYFGSGYGPVERAALVLRMHGSPVYFRRKGRGQYQ HHHCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHEEEEEEECCCEEEEEECCCCCCC RAPEEQLKMALASLERKRQQALVQAGYEEELKARRLPAAFEGKALALLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEHH LDAAALALGVSPARLMLDCGGVASARALHEARFLAEHFPHGTGFPPVTVGPLPEDLPRAG HHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHCC VDAFSIDDVTTTEIDDAFSVEHLPENRVRIGIHIAAPALGITRGDEIDAIARARLSTVYM CCEEECCCCEECCCCCCCCCCCCCCCCEEEEEEEECCEECCCCCCCHHHHHHHHHEEEEE PGDKITMLPDDVVEVFTLKEGGYRPALSLYIIVDRATQDIVANETRAEYVFVKSNLRHNT CCCEEEECCHHHEEEEEECCCCCCCEEEEEEEEECCCHHHHCCCCCCEEEEEECCCCHHH LEEVVTEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHISITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRALGAPTGPKRTR ECCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCHHC MQTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYA CCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEE VVQGFDDTYTAYADHQRRMEYFWCLRWLRQENRRQVVAAVVKGDLVRLEEVPLLLHVPGL EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCC GVHARGTRVLLDVMSIDELTIEASVRLLNVLDAPSASDTEAADEEGEGDETLLDAPDDSA CEECCCCEEEEEEHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCC ESEAEALAESGAAEGEAGALAESGAAEGEAGAPAAGTDAGAAGSGEGDTK HHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA