| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026157
Identifier: 238026157
GI number: 238026157
Start: 515053
End: 515652
Strand: Reverse
Name: 238026157
Synonym: bglu_1g04870
Alternate gene names: NA
Gene position: 515652-515053 (Counterclockwise)
Preceding gene: 238026158
Following gene: 339905956
Centisome position: 13.2
GC content: 64.17
Gene sequence:
>600_bases TTGCCGCGCCCTTTTTTCGAGGTGTGCAATTTGAAATCACTCGCTTTTGCCGCGGCGTCGTTTGCCGCGGTTGCCGCCCT GGCCGGCTGCGCCCATTCGAAATCGCCCAGCCAGCCGTCCAACAAGGACGACAGCGCCTTCGTCTATCTACTCGACCGCC AGCCGACCTGGCGCGAGAACCCCGTGGATACGCTGCCGCCGCTGCCGCAGCCGTCGAACCTGCTGCCGTTCGAGGTCTCA CAGAACTCGCCGCTCAAGTTTTTCGTCGATGACAAGTCGATTTCCGTCGGCAGCGACGGCATCGTGCGCTACACCTCGGT GATCACGAGCCCGGCCGGCGCGCGCAACGTGATCTACGAAGGCATCCGCTGCGACACTTACGAATGGCGCCAGTACGCGG CGCTCAACGCCGACCACGACGGCTGGGACCGCACGGTCGCGACCGACTGGCGGCGCATCGAGAACGGCAACCTGAATGCG TACCGCGCGGCGCTCTATCAGGATTACTTCTGCTCGAACAAGATGCCCGCCGCGAAGGCCGGCACGATCATCGACAACCT GCGCGCCCATCGCACGATCCTGAACCAGCAGGTGCGCTGA
Upstream 100 bases:
>100_bases GTGCGAGCCCGTACGACGAAGCACCGGGCAGCTTTCTGCTGCGCGACTGAGATCCGGCCGACCGGGTAGGAAAATCAAGC ATGTCCGGGCGCGGCAGCAT
Downstream 100 bases:
>100_bases CGCGGCCGCGCCGCGGCGCACGGTCAGCAAAACGAAAAGCCCGCGATCTTGCGACGCGGGCTTTTTGCCGTCAGGGTCCG GACGCACCCTGCGTCAGATC
Product: lipoprotein
Products: NA
Alternate protein names: Periplasmic Protein
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MPRPFFEVCNLKSLAFAAASFAAVAALAGCAHSKSPSQPSNKDDSAFVYLLDRQPTWRENPVDTLPPLPQPSNLLPFEVS QNSPLKFFVDDKSISVGSDGIVRYTSVITSPAGARNVIYEGIRCDTYEWRQYAALNADHDGWDRTVATDWRRIENGNLNA YRAALYQDYFCSNKMPAAKAGTIIDNLRAHRTILNQQVR
Sequences:
>Translated_199_residues MPRPFFEVCNLKSLAFAAASFAAVAALAGCAHSKSPSQPSNKDDSAFVYLLDRQPTWRENPVDTLPPLPQPSNLLPFEVS QNSPLKFFVDDKSISVGSDGIVRYTSVITSPAGARNVIYEGIRCDTYEWRQYAALNADHDGWDRTVATDWRRIENGNLNA YRAALYQDYFCSNKMPAAKAGTIIDNLRAHRTILNQQVR >Mature_198_residues PRPFFEVCNLKSLAFAAASFAAVAALAGCAHSKSPSQPSNKDDSAFVYLLDRQPTWRENPVDTLPPLPQPSNLLPFEVSQ NSPLKFFVDDKSISVGSDGIVRYTSVITSPAGARNVIYEGIRCDTYEWRQYAALNADHDGWDRTVATDWRRIENGNLNAY RAALYQDYFCSNKMPAAKAGTIIDNLRAHRTILNQQVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22188; Mature: 22057
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPFFEVCNLKSLAFAAASFAAVAALAGCAHSKSPSQPSNKDDSAFVYLLDRQPTWREN CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC PVDTLPPLPQPSNLLPFEVSQNSPLKFFVDDKSISVGSDGIVRYTSVITSPAGARNVIYE CCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCEEHHHHHCCCCCCHHHHHC GIRCDTYEWRQYAALNADHDGWDRTVATDWRRIENGNLNAYRAALYQDYFCSNKMPAAKA CCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHH GTIIDNLRAHRTILNQQVR HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PRPFFEVCNLKSLAFAAASFAAVAALAGCAHSKSPSQPSNKDDSAFVYLLDRQPTWREN CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC PVDTLPPLPQPSNLLPFEVSQNSPLKFFVDDKSISVGSDGIVRYTSVITSPAGARNVIYE CCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCEEHHHHHCCCCCCHHHHHC GIRCDTYEWRQYAALNADHDGWDRTVATDWRRIENGNLNAYRAALYQDYFCSNKMPAAKA CCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHH GTIIDNLRAHRTILNQQVR HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA