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The map label for this gene is ltrA [H]

Identifier: 238026077

GI number: 238026077

Start: 422467

End: 423390

Strand: Direct

Name: ltrA [H]

Synonym: bglu_1g04050

Alternate gene names: 238026077

Gene position: 422467-423390 (Clockwise)

Preceding gene: 238026074

Following gene: 238026078

Centisome position: 10.81

GC content: 75.76

Gene sequence:

>924_bases
ATGGAAGCCCTTTTCTCCCCGCATCTGGCCGTGTTCGTCGACGTCGTCGAGCTGCAGAGCTTCTCGGCCGCCGCGCGGCG
CCACGACCTGGCCGCCTCCTCGATCGCGCGGCGCATCGATCAGCTCGAGGCGCAGCTCGGCGTGCGCGTGCTGCACCGGA
CCACCCACGCGGTGCGGCCGACCGAGGCCGGACAACTGCTGTACGACCGCGCCAAGGCGCTGCTGGCCGGGATTCGCGGC
CTGCACGCCGAGCTGCACCGGCAGCGTGACGAGCCGGGCGGGCTGGTGCGGATCGATTGCCCGGCGCCGTTCGGGCGGCT
GCACCTGATGCCGGCCGTGGCCGCGTTCATGCGGCGCCACGCGGCGATCGTGGTCGAGCTGGTGCTGACCGACAGCATGG
TGGACCTGCCCGGCGAGCGGCTCGGCGCCGACGTCGACCTGGCGTTGCGGATCGGCCCGGTGGCGGCCACGCGCTTCGTC
GCGACGCTGCTCGCGCCGCAGCGGCGCGTGCTGTGCGCGAGTCCGGCCTATCTGGCCGCGCGCGGCACGCCGGCGTCGCT
CGACGCGCTCGCGCGCCACGACTGCCTCGCCTGGCACGGCTCGCCGCCGCCCGGCGCGTGGCGCTTCGGCAAGCAGCGTC
ACGCGCCCGACGCGCCGCGCTTTCGCAGCAACCATTCGGAGGCGTTGCTGGCCGCCGCCGTCGAGGGGCTCGGCATCGCC
CATCTGCCGACCTGGCTGGCCGGCGCGGCGCTCGCGAACGGCTCGCTGGTCGCCCTCGCCATCGCGGGCGAGGCCCCCGC
GCTGGAGGACGCGACCATCCATCTGCTGCGCCAGCAGGCGGGCGGCGCGGCGCGCACGCTCGCGCTCGTCGAGTTCCTGC
GCGAGTGGTTCGCGCAGCCGCCGTGGGAGCGGGCGGCGCGGTGA

Upstream 100 bases:

>100_bases
GCAAAGGCGCATCATCGCTTTGCGTAATACGCACAAGCGTGCCGAGCAGCCCATCGCCACCGTGCGCCGTTCCCTTCCGC
TCGCGCTGCCCGCCCGCTCC

Downstream 100 bases:

>100_bases
GCGCGGCCGGGCCGCGCGGTTCCGCCGATGTGAAGCCGATGTGAAGCCACGCTGGGCTGCCGCTGGGATGCCGTCAGGGA
GCCGAGGACTACGCGGCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEALFSPHLAVFVDVVELQSFSAAARRHDLAASSIARRIDQLEAQLGVRVLHRTTHAVRPTEAGQLLYDRAKALLAGIRG
LHAELHRQRDEPGGLVRIDCPAPFGRLHLMPAVAAFMRRHAAIVVELVLTDSMVDLPGERLGADVDLALRIGPVAATRFV
ATLLAPQRRVLCASPAYLAARGTPASLDALARHDCLAWHGSPPPGAWRFGKQRHAPDAPRFRSNHSEALLAAAVEGLGIA
HLPTWLAGAALANGSLVALAIAGEAPALEDATIHLLRQQAGGAARTLALVEFLREWFAQPPWERAAR

Sequences:

>Translated_307_residues
MEALFSPHLAVFVDVVELQSFSAAARRHDLAASSIARRIDQLEAQLGVRVLHRTTHAVRPTEAGQLLYDRAKALLAGIRG
LHAELHRQRDEPGGLVRIDCPAPFGRLHLMPAVAAFMRRHAAIVVELVLTDSMVDLPGERLGADVDLALRIGPVAATRFV
ATLLAPQRRVLCASPAYLAARGTPASLDALARHDCLAWHGSPPPGAWRFGKQRHAPDAPRFRSNHSEALLAAAVEGLGIA
HLPTWLAGAALANGSLVALAIAGEAPALEDATIHLLRQQAGGAARTLALVEFLREWFAQPPWERAAR
>Mature_307_residues
MEALFSPHLAVFVDVVELQSFSAAARRHDLAASSIARRIDQLEAQLGVRVLHRTTHAVRPTEAGQLLYDRAKALLAGIRG
LHAELHRQRDEPGGLVRIDCPAPFGRLHLMPAVAAFMRRHAAIVVELVLTDSMVDLPGERLGADVDLALRIGPVAATRFV
ATLLAPQRRVLCASPAYLAARGTPASLDALARHDCLAWHGSPPPGAWRFGKQRHAPDAPRFRSNHSEALLAAAVEGLGIA
HLPTWLAGAALANGSLVALAIAGEAPALEDATIHLLRQQAGGAARTLALVEFLREWFAQPPWERAAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=255, Percent_Identity=32.9411764705882, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=29.8657718120805, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=31.7567567567568, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693193, Length=258, Percent_Identity=32.5581395348837, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789639, Length=260, Percent_Identity=28.4615384615385, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787128, Length=251, Percent_Identity=30.6772908366534, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787589, Length=255, Percent_Identity=28.6274509803922, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788706, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=257, Percent_Identity=28.7937743190661, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32985; Mature: 32985

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALFSPHLAVFVDVVELQSFSAAARRHDLAASSIARRIDQLEAQLGVRVLHRTTHAVRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQLLYDRAKALLAGIRGLHAELHRQRDEPGGLVRIDCPAPFGRLHLMPAVAAFMRRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
AAIVVELVLTDSMVDLPGERLGADVDLALRIGPVAATRFVATLLAPQRRVLCASPAYLAA
HHHHHHHHHHHHHHCCCHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEECCCCCEEE
RGTPASLDALARHDCLAWHGSPPPGAWRFGKQRHAPDAPRFRSNHSEALLAAAVEGLGIA
CCCCHHHHHHHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH
HLPTWLAGAALANGSLVALAIAGEAPALEDATIHLLRQQAGGAARTLALVEFLREWFAQP
HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
PWERAAR
CHHHHCC
>Mature Secondary Structure
MEALFSPHLAVFVDVVELQSFSAAARRHDLAASSIARRIDQLEAQLGVRVLHRTTHAVRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQLLYDRAKALLAGIRGLHAELHRQRDEPGGLVRIDCPAPFGRLHLMPAVAAFMRRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
AAIVVELVLTDSMVDLPGERLGADVDLALRIGPVAATRFVATLLAPQRRVLCASPAYLAA
HHHHHHHHHHHHHHCCCHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCCEEECCCCCEEE
RGTPASLDALARHDCLAWHGSPPPGAWRFGKQRHAPDAPRFRSNHSEALLAAAVEGLGIA
CCCCHHHHHHHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH
HLPTWLAGAALANGSLVALAIAGEAPALEDATIHLLRQQAGGAARTLALVEFLREWFAQP
HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
PWERAAR
CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]