| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238026057
Identifier: 238026057
GI number: 238026057
Start: 397352
End: 398143
Strand: Reverse
Name: 238026057
Synonym: bglu_1g03850
Alternate gene names: NA
Gene position: 398143-397352 (Counterclockwise)
Preceding gene: 238026058
Following gene: 238026055
Centisome position: 10.19
GC content: 67.17
Gene sequence:
>792_bases ATGAGCTACGCGCCCTCCCTGTTCGGCGGCAACACGCCGCCGCCTTCCTCCGCCCCGCACTCGGCCTCGTCGACCGACGC CAGCTTCCAGGCGCGTTCGCTGCTCGACCTGCTGTACGACGGCTTCTTCATGATGTTCCTGCTGAAGAACGGCCGCGAGC CCGGCGAGGCCAACGAATTCCGCGGGCGAATCCAGGAGTTCCTCGCCGATTTCGAGCGCGGCGCGAAAAAGCTCAACGTC GGCGCCGACGATGTGTACGCCGCCAAGTTCGCGTTCTGCGCCGCGATCGACGAGGCCGTGCTGTCGTCGCAGTTCAAGGT GCGCGCCGAATGGGAGCAGCGGCCGCTGCAGCTCGTGCTGTTCGGCGAGCAGCTGGCCGGCGAGAAGTTCTTCCAGTATC TCGAGGAATGCCGCGCGCGCGGCGCCGCGCGCCTGCAGTCGCTCGAGGTGTTCCACATGTGCCTGCTGCTCGGCTTCCAG GGCAAGTACCTGCTCGAAGGGCCCGAGAAGCTCGCCTACCTGACCGCGCGGATCGGCGACGAGATCGCGCAGATGAAGGG CAAGCGCGCGCCGTTCGCGCCACACTGGGCGCTGCCCGACCAGATCGCGCACCGCCTGAAGCGCGAGGTGCCGCTGTGGG CCATCGGCGCCGTGTTCGCGCTGGTGGGGCTGCTCGCGTTCATCGGGCTCAATACCTACCTGCGCGACCATACGCTGAAG GCGCTCGCGCCGTACTCGCAGATCATCAAGGTCGGACCGGAATCGGCGAACCTGACGATTTCGCTGCCTTGA
Upstream 100 bases:
>100_bases GCAGCCCGCTCTATGAGCGCATGCTGCAGTCGCAGTCGGCGATGATCTACGCGCCGTCGGGCATCAACGACCTCAAATTC GAACTGATCGCCGTCACATC
Downstream 100 bases:
>100_bases GGAGGGCGCGGCGGCCGTGACGGCTAGAGTCCGGGGCGGTGCCCCGGGCGGCTCGATCACGGCCGCGGCCCGGCTTGCCC GAGCAGCGGCCTGGCGGCGC
Product: OmpA family protein
Products: NA
Alternate protein names: OmpA Family Protein; Outer Membrane Protein; Type IV/VI Secretion System Protein; OmpA/MotB Domain-Containing Protein; Type VI Secretion System Core Protein; Secretion System Protein; Flagellar Motor Rotation Protein MotB; Replication/Virulence Associated Protein; DotU Family Type IV / VI Secretion System Protein; Transmembrane Protein; Type VI Secretion System Protein; OmpA/MotB Domain Protein; Type VI Secretion System Protein ImpK; OmpA-Family Protein; Type IV / VI Secretion System Transmembrane Protein; Type VI Secretion; Outer Membrane Protein Ompa/Motb Family; OmpA/MotB; Flagellar Motor Protein; Type IV / VI Secretion System Family Protein DotU
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNV GADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQ GKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK ALAPYSQIIKVGPESANLTISLP
Sequences:
>Translated_263_residues MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNV GADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQ GKYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK ALAPYSQIIKVGPESANLTISLP >Mature_262_residues SYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEFRGRIQEFLADFERGAKKLNVG ADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVLFGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQG KYLLEGPEKLAYLTARIGDEIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLKA LAPYSQIIKVGPESANLTISLP
Specific function: Unknown
COG id: COG3455
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29160; Mature: 29029
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEF CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RGRIQEFLADFERGAKKLNVGADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVL HHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCEEEEE FGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARIGD ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH EIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK HHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAPYSQIIKVGPESANLTISLP HHHHHHHHHHCCCCCCCEEEECC >Mature Secondary Structure SYAPSLFGGNTPPPSSAPHSASSTDASFQARSLLDLLYDGFFMMFLLKNGREPGEANEF CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH RGRIQEFLADFERGAKKLNVGADDVYAAKFAFCAAIDEAVLSSQFKVRAEWEQRPLQLVL HHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHCCCCEEEEE FGEQLAGEKFFQYLEECRARGAARLQSLEVFHMCLLLGFQGKYLLEGPEKLAYLTARIGD ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHH EIAQMKGKRAPFAPHWALPDQIAHRLKREVPLWAIGAVFALVGLLAFIGLNTYLRDHTLK HHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAPYSQIIKVGPESANLTISLP HHHHHHHHHHCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA