| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is hitA [H]
Identifier: 238026015
GI number: 238026015
Start: 358087
End: 358452
Strand: Direct
Name: hitA [H]
Synonym: bglu_1g03410
Alternate gene names: 238026015
Gene position: 358087-358452 (Clockwise)
Preceding gene: 238026014
Following gene: 238026016
Centisome position: 9.17
GC content: 68.85
Gene sequence:
>366_bases ATGAGTCACGATCCGGATTGCCTGTTCTGCAAGATCGCGGCGGGCGAGATTCCGAGCGAGATGGTCCACCAGGACGACGA GTTCGTCGCGTTTCGCGACATTCGTCCGGCGGCCGCCACGCACGTACTCGTGATTCCGCGCCGGCATCTGCCCACGCTGT CGGCCGCCACGCTTGAGGACGCGCCGCTGCTTGGTAGAATGCTGGTCCTCGTCGCGCGGCTGGCCGAGCAGCTCGGCTGC GCCTACACGGGCGGCGAGACGGGGTTCCGGACCGTCATCAATACCGGGCCGGGCGGCGGGCAGGAGGTGTTCCACCTGCA TGCGCACCTGCTGGCGGGGCCGCGCCCGTGGAAGCGGATGGGGTGA
Upstream 100 bases:
>100_bases TACCGTATCATCAAAGGCTGGCTGTTCCTGAACGACGACAAGGCACTCGATCCGCGGGCCTGGTTCTGACGGGCGGGGGC GGCGCGACGCGGAGAGCACG
Downstream 100 bases:
>100_bases GTGGGACCTCGCGGGAAGATCATCGCGGGCCGCGCCGTACCGGCGCCGGCCCGCTCGGGAAAGAGGCCGGCGTCGCCGGC AGTTGACGCCGCCGCGGCGG
Product: HIT family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSHDPDCLFCKIAAGEIPSEMVHQDDEFVAFRDIRPAAATHVLVIPRRHLPTLSAATLEDAPLLGRMLVLVARLAEQLGC AYTGGETGFRTVINTGPGGGQEVFHLHAHLLAGPRPWKRMG
Sequences:
>Translated_121_residues MSHDPDCLFCKIAAGEIPSEMVHQDDEFVAFRDIRPAAATHVLVIPRRHLPTLSAATLEDAPLLGRMLVLVARLAEQLGC AYTGGETGFRTVINTGPGGGQEVFHLHAHLLAGPRPWKRMG >Mature_120_residues SHDPDCLFCKIAAGEIPSEMVHQDDEFVAFRDIRPAAATHVLVIPRRHLPTLSAATLEDAPLLGRMLVLVARLAEQLGCA YTGGETGFRTVINTGPGGGQEVFHLHAHLLAGPRPWKRMG
Specific function: Unknown
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HIT domain [H]
Homologues:
Organism=Homo sapiens, GI4885413, Length=108, Percent_Identity=41.6666666666667, Blast_Score=96, Evalue=8e-21, Organism=Homo sapiens, GI14211923, Length=107, Percent_Identity=37.3831775700935, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1787346, Length=111, Percent_Identity=48.6486486486487, Blast_Score=95, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17506713, Length=108, Percent_Identity=45.3703703703704, Blast_Score=103, Evalue=1e-23, Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=46.2962962962963, Blast_Score=97, Evalue=2e-21, Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=46.2962962962963, Blast_Score=97, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011146 - InterPro: IPR011151 - InterPro: IPR019808 - InterPro: IPR001310 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13118; Mature: 12987
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHDPDCLFCKIAAGEIPSEMVHQDDEFVAFRDIRPAAATHVLVIPRRHLPTLSAATLED CCCCCCEEEEEEECCCCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC APLLGRMLVLVARLAEQLGCAYTGGETGFRTVINTGPGGGQEVFHLHAHLLAGPRPWKRM CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC G C >Mature Secondary Structure SHDPDCLFCKIAAGEIPSEMVHQDDEFVAFRDIRPAAATHVLVIPRRHLPTLSAATLED CCCCCEEEEEEECCCCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC APLLGRMLVLVARLAEQLGCAYTGGETGFRTVINTGPGGGQEVFHLHAHLLAGPRPWKRM CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA