| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is hofH [C]
Identifier: 238025711
GI number: 238025711
Start: 32176
End: 32667
Strand: Reverse
Name: hofH [C]
Synonym: bglu_1g00330
Alternate gene names: 238025711
Gene position: 32667-32176 (Counterclockwise)
Preceding gene: 238025712
Following gene: 238025710
Centisome position: 0.84
GC content: 71.34
Gene sequence:
>492_bases ATGCGAGCCCCCGGCACCACCGCGCTGCGTCATCCGCCCTCGCGGATGCGCGGCTTCACGCTGCTCGAGATGCTGGTGGT GCTCGTGATCGCGGGAATCCTGGTCTCGGCGGCGACCCTGACGATGCACCGCAATCCGCGCACCGACCTGCGTGAAGAGG CGCAGCGCGTGGCGCTGCTGCTCGAGAGCGCCGGCGACGAGGCGCAGGTGCGCGCGCGGCCGATCGCCTGGCAGCCGACC GACCACGGCTTCCGTTTCGACATCCGCGGCGAGGACGGCTGGCACACGCTGCGCGACGACCTCTATCGCCCGCGTGACTG GGACGGCGGCGTGACGGGCGCGTCGATCGACTATCCCGGCTCCGACACGCCGGCGACGCGGATCGTGTTCGGCACCGAAC CGGTCGACGTGCCGGTGCGCATCACGCTCTATTCCGGGATCGGCAGCGTGACCATCGTCGGCACCGGCAACGGCCGCTAC GAGGTGCGCTGA
Upstream 100 bases:
>100_bases GACGCCAAGGAAGGCGGCGAGAACAACGACGCCGACATCGGCTCCTGGCAGTAGCCGTTCGCCCCGTCGCCTGCGATCCT CCGCGCGCCTCACGCCCGAC
Downstream 100 bases:
>100_bases CGATGGCCGCGCCGCTCCCCCTCGCACGCCGCGCGCCCCGGGCCGCCGCGCATGGCTTCACGATGATCGAGGTGCTGATC GCGCTGGCGATCATCGCGGT
Product: general secretion pathway protein H
Products: NA
Alternate protein names: General Secretion Pathway Protein GspH; Type II Secretion Pathway Protein H; Type II Secretion System Protein; Type II Secretion System Protein G; Type II Secretory Pathway Pseudopilin PulG; General Secretory Pathway Protein H/U
Number of amino acids: Translated: 163; Mature: 163
Protein sequence:
>163_residues MRAPGTTALRHPPSRMRGFTLLEMLVVLVIAGILVSAATLTMHRNPRTDLREEAQRVALLLESAGDEAQVRARPIAWQPT DHGFRFDIRGEDGWHTLRDDLYRPRDWDGGVTGASIDYPGSDTPATRIVFGTEPVDVPVRITLYSGIGSVTIVGTGNGRY EVR
Sequences:
>Translated_163_residues MRAPGTTALRHPPSRMRGFTLLEMLVVLVIAGILVSAATLTMHRNPRTDLREEAQRVALLLESAGDEAQVRARPIAWQPT DHGFRFDIRGEDGWHTLRDDLYRPRDWDGGVTGASIDYPGSDTPATRIVFGTEPVDVPVRITLYSGIGSVTIVGTGNGRY EVR >Mature_163_residues MRAPGTTALRHPPSRMRGFTLLEMLVVLVIAGILVSAATLTMHRNPRTDLREEAQRVALLLESAGDEAQVRARPIAWQPT DHGFRFDIRGEDGWHTLRDDLYRPRDWDGGVTGASIDYPGSDTPATRIVFGTEPVDVPVRITLYSGIGSVTIVGTGNGRY EVR
Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17965; Mature: 17965
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAPGTTALRHPPSRMRGFTLLEMLVVLVIAGILVSAATLTMHRNPRTDLREEAQRVALL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHH LESAGDEAQVRARPIAWQPTDHGFRFDIRGEDGWHTLRDDLYRPRDWDGGVTGASIDYPG HHCCCCCCEEEECCEEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEECCCC SDTPATRIVFGTEPVDVPVRITLYSGIGSVTIVGTGNGRYEVR CCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEC >Mature Secondary Structure MRAPGTTALRHPPSRMRGFTLLEMLVVLVIAGILVSAATLTMHRNPRTDLREEAQRVALL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHH LESAGDEAQVRARPIAWQPTDHGFRFDIRGEDGWHTLRDDLYRPRDWDGGVTGASIDYPG HHCCCCCCEEEECCEEECCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEECCCC SDTPATRIVFGTEPVDVPVRITLYSGIGSVTIVGTGNGRYEVR CCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA