| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025709
Identifier: 238025709
GI number: 238025709
Start: 31105
End: 31782
Strand: Reverse
Name: 238025709
Synonym: bglu_1g00310
Alternate gene names: NA
Gene position: 31782-31105 (Counterclockwise)
Preceding gene: 238025710
Following gene: 238025708
Centisome position: 0.81
GC content: 70.21
Gene sequence:
>678_bases ATGAAACCAACCGCTCGCTTTAAGCGCTGCGGCGCGCGCGCCGATCGCGGCTTCACGCTGATCGAGATGCTGATCGCGAT CACGATCCTCGCCGTGCTCGCGCTGCTGTCGTGGCGCGGGCTCGACCAGGTGATCCGCGGCCGCGACCGGATAGCGGCCG TGATGGAGGACGAGCGCACCTTCGCGCAGATGTTCGACCAGATGCGCATCGACGCGCGCCGCGCCGTGACCGACGACGAA GCCGGCCAGCCGCCGGTGCGGGTGGTCGGCAACACGTTGCAGATCGTGCGCGGCTTCGATATGCCGGGCAGCCCGCCGCG CATCCAGGTGGTGCGCTACGTGATTTCCGGCGGCCGCGTGGTGCGCTACGTCTCGCCGCTGATCTCCGACGAGCGCGTGC TGCGCAGCACGCTCGGCGACCCCAGCGTCGACGGCTGGAGCGCCGTGCCGCTGATGCGCGGAGTGGGCGTGATCACCGCG CGCGTCTACGTGCCGAAGATCGGCTGGACCACCAACATGCCCGTCGCCGACGACGCGCTCGGCAAGCAAAACCAGGCGCT CAGGCAGCCGGTGGTGGGCAACGCGCCGCCCGAGCGCTCGGTGACGGGCCTCGAGGTCGGCATCGGCGCGACCTCGCTGC GCGTGCCGGTCAAGCGCGTGTTCATGGTTGGGGAATGA
Upstream 100 bases:
>100_bases GTCAGCAGCACGCCGAATCCGACATTCCGCCGCGTCGAGGTGGCGGTACGCAAGACGGGCGAAGCCAGCGTGCTCGCCCA GATGGTCACGGTGGTCGCGA
Downstream 100 bases:
>100_bases CGATGCGCGCATCCGCCTTGCTTCATGATTCGCGCCGCTGCGGCCGCCGGGCTCGCCCGTCGCCGGCCCGCCAGCGCGGC GTGGCGATCATCAGCGCGCT
Product: general secretory pathway protein J
Products: NA
Alternate protein names: Type II Secretory Pathway Component PulJ; General Secretion Pathway Protein J; Type II Secretion System Protein J
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MKPTARFKRCGARADRGFTLIEMLIAITILAVLALLSWRGLDQVIRGRDRIAAVMEDERTFAQMFDQMRIDARRAVTDDE AGQPPVRVVGNTLQIVRGFDMPGSPPRIQVVRYVISGGRVVRYVSPLISDERVLRSTLGDPSVDGWSAVPLMRGVGVITA RVYVPKIGWTTNMPVADDALGKQNQALRQPVVGNAPPERSVTGLEVGIGATSLRVPVKRVFMVGE
Sequences:
>Translated_225_residues MKPTARFKRCGARADRGFTLIEMLIAITILAVLALLSWRGLDQVIRGRDRIAAVMEDERTFAQMFDQMRIDARRAVTDDE AGQPPVRVVGNTLQIVRGFDMPGSPPRIQVVRYVISGGRVVRYVSPLISDERVLRSTLGDPSVDGWSAVPLMRGVGVITA RVYVPKIGWTTNMPVADDALGKQNQALRQPVVGNAPPERSVTGLEVGIGATSLRVPVKRVFMVGE >Mature_225_residues MKPTARFKRCGARADRGFTLIEMLIAITILAVLALLSWRGLDQVIRGRDRIAAVMEDERTFAQMFDQMRIDARRAVTDDE AGQPPVRVVGNTLQIVRGFDMPGSPPRIQVVRYVISGGRVVRYVSPLISDERVLRSTLGDPSVDGWSAVPLMRGVGVITA RVYVPKIGWTTNMPVADDALGKQNQALRQPVVGNAPPERSVTGLEVGIGATSLRVPVKRVFMVGE
Specific function: Unknown
COG id: COG4795
COG function: function code U; Type II secretory pathway, component PulJ
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24647; Mature: 24647
Theoretical pI: Translated: 11.09; Mature: 11.09
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTARFKRCGARADRGFTLIEMLIAITILAVLALLSWRGLDQVIRGRDRIAAVMEDERT CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHH FAQMFDQMRIDARRAVTDDEAGQPPVRVVGNTLQIVRGFDMPGSPPRIQVVRYVISGGRV HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH VRYVSPLISDERVLRSTLGDPSVDGWSAVPLMRGVGVITARVYVPKIGWTTNMPVADDAL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCHHC GKQNQALRQPVVGNAPPERSVTGLEVGIGATSLRVPVKRVFMVGE CCCHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHEECCC >Mature Secondary Structure MKPTARFKRCGARADRGFTLIEMLIAITILAVLALLSWRGLDQVIRGRDRIAAVMEDERT CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHH FAQMFDQMRIDARRAVTDDEAGQPPVRVVGNTLQIVRGFDMPGSPPRIQVVRYVISGGRV HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHH VRYVSPLISDERVLRSTLGDPSVDGWSAVPLMRGVGVITARVYVPKIGWTTNMPVADDAL HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCHHC GKQNQALRQPVVGNAPPERSVTGLEVGIGATSLRVPVKRVFMVGE CCCHHHHHCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA