Click here to switch to the map view.

The map label for this gene is yodB [H]

Identifier: 238025689

GI number: 238025689

Start: 9599

End: 10144

Strand: Reverse

Name: yodB [H]

Synonym: bglu_1g00110

Alternate gene names: 238025689

Gene position: 10144-9599 (Counterclockwise)

Preceding gene: 238025690

Following gene: NA

Centisome position: 0.26

GC content: 69.6

Gene sequence:

>546_bases
ATGATGAACCCCACTTCCTCTCCTTCGGGATTCAGCCCGCTCGCGCGGGCGCTGCACTGGCTGATGGCCATGCTGATCAT
CGCGATGCTGTTCATCGGGGTGGGCATGGTGGGCTCGGTGTCGGCCCGGCACACGGTGCTGGTGGCGATTCACAAGCCGC
TCGGAATCGCGATCCTGGTGCTGGTGATCGTGCGGCTGGTGGTGCGGCTCAGGCGCGGGGCGCCGCCGCTGCCGGACGAT
CTGCCTTGGTGGCAGAAGGCGGCCGCGCACCTGTCGCATTGGGTGCTGTATGCGCTGATGGTGGCGATGCCGCTGATCGG
CTGGGCCATGCTGTCGGCCGGCGGGTATCCGGTGGTGCTGGGCGGCGGGGTGCGGCTGCCGGCGCTGGTGGCGGCGGACC
CGGTGGCGTTTGCGTGGCTGCGCAACGCGCATGAGGTGCTGGCGTTCGTGCTGTTCGCCACGGTACTGCTGCATCTGGCG
GCCGCGCTGTTTCATGGGCTGATCCGGCGCGACGGGGTGCTGCGGAGCATGGTGCGGGGGCGGTGA

Upstream 100 bases:

>100_bases
TGCTGGCGGCGCGCTCGGCGGCCTATGCCGATTCGTACAAGCTGCGCACCAGCGAGGAAGCCGGCGTGCCCGGTTATGCC
CGCGCCGCGCCGGAGGCACG

Downstream 100 bases:

>100_bases
TTTTTTCCGGGGCTTGGCCTTTTGCATTGAAAAGGCTCCTTCGGGAGCCTTTCCTACCTCTCGAGAAAACGCTTCAGATA
ATCAACTCGTTGTCTGGTGA

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MMNPTSSPSGFSPLARALHWLMAMLIIAMLFIGVGMVGSVSARHTVLVAIHKPLGIAILVLVIVRLVVRLRRGAPPLPDD
LPWWQKAAAHLSHWVLYALMVAMPLIGWAMLSAGGYPVVLGGGVRLPALVAADPVAFAWLRNAHEVLAFVLFATVLLHLA
AALFHGLIRRDGVLRSMVRGR

Sequences:

>Translated_181_residues
MMNPTSSPSGFSPLARALHWLMAMLIIAMLFIGVGMVGSVSARHTVLVAIHKPLGIAILVLVIVRLVVRLRRGAPPLPDD
LPWWQKAAAHLSHWVLYALMVAMPLIGWAMLSAGGYPVVLGGGVRLPALVAADPVAFAWLRNAHEVLAFVLFATVLLHLA
AALFHGLIRRDGVLRSMVRGR
>Mature_181_residues
MMNPTSSPSGFSPLARALHWLMAMLIIAMLFIGVGMVGSVSARHTVLVAIHKPLGIAILVLVIVRLVVRLRRGAPPLPDD
LPWWQKAAAHLSHWVLYALMVAMPLIGWAMLSAGGYPVVLGGGVRLPALVAADPVAFAWLRNAHEVLAFVLFATVLLHLA
AALFHGLIRRDGVLRSMVRGR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=174, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI1787296, Length=180, Percent_Identity=27.2222222222222, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 19537; Mature: 19537

Theoretical pI: Translated: 12.31; Mature: 12.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNPTSSPSGFSPLARALHWLMAMLIIAMLFIGVGMVGSVSARHTVLVAIHKPLGIAILV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHHHHHH
LVIVRLVVRLRRGAPPLPDDLPWWQKAAAHLSHWVLYALMVAMPLIGWAMLSAGGYPVVL
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GGGVRLPALVAADPVAFAWLRNAHEVLAFVLFATVLLHLAAALFHGLIRRDGVLRSMVRG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
R
C
>Mature Secondary Structure
MMNPTSSPSGFSPLARALHWLMAMLIIAMLFIGVGMVGSVSARHTVLVAIHKPLGIAILV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCHHHHHHHH
LVIVRLVVRLRRGAPPLPDDLPWWQKAAAHLSHWVLYALMVAMPLIGWAMLSAGGYPVVL
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
GGGVRLPALVAADPVAFAWLRNAHEVLAFVLFATVLLHLAAALFHGLIRRDGVLRSMVRG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]