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The map label for this gene is exbD [H]

Identifier: 238025554

GI number: 238025554

Start: 2792616

End: 2793038

Strand: Reverse

Name: exbD [H]

Synonym: bglu_2g22510

Alternate gene names: 238025554

Gene position: 2793038-2792616 (Counterclockwise)

Preceding gene: 238025555

Following gene: 238025553

Centisome position: 98.79

GC content: 65.96

Gene sequence:

>423_bases
ATGGCCATGAGTGTCGGGCAGGAAGACGACGACGAGGTGATCGCCGCGATCAACACCACGCCGCTCGTCGACGTGATGCT
GGTGCTGCTGATCATCTTCCTGATCACGATCCCGGTCGTCACGCACACGATTCCGCTGCAACTGCCGAAGGAGGCCGTGC
AGCCGCTGCAGACCACGCCCAAGAGCATCGAGCTCGCGGTGAACCGCGAGGGCCAGTACTTCTGGGGCGAGCAGCTGGTG
GACGGGCCGACGCTGCTCGCCAAGCTGAAGGCGGTCTCGCAGATGGTGCCGCAGCCGGACGTGCACGTGCGCGGCGATCA
GGACACGCGCTACGAGTTCATCGGGCGTCTGATCACCGATTGCGAGCGGGCGGGCATCGCCAAGGTGTCCTTCATCACCG
AGCCGCCGGCGCGCGGCGGTTAA

Upstream 100 bases:

>100_bases
TTCGGCGCGCAGCTGCACACCGTGGTGCTGGCCGGCGGCAAGCGCACCCGCGTGGCCGGCGCGCCGGCCGCCACGCTCGG
CCGCTGAGCGGAGGCACGCC

Downstream 100 bases:

>100_bases
GGCCAGGGAGCCGACTATGGGTATGAACGTGTCCTCGCGCAGCGGCGGCGAGCCGGAGGTGATGGTCGACATCAACACCA
CGCCGCTGATCGACGTGATG

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAMSVGQEDDDEVIAAINTTPLVDVMLVLLIIFLITIPVVTHTIPLQLPKEAVQPLQTTPKSIELAVNREGQYFWGEQLV
DGPTLLAKLKAVSQMVPQPDVHVRGDQDTRYEFIGRLITDCERAGIAKVSFITEPPARGG

Sequences:

>Translated_140_residues
MAMSVGQEDDDEVIAAINTTPLVDVMLVLLIIFLITIPVVTHTIPLQLPKEAVQPLQTTPKSIELAVNREGQYFWGEQLV
DGPTLLAKLKAVSQMVPQPDVHVRGDQDTRYEFIGRLITDCERAGIAKVSFITEPPARGG
>Mature_139_residues
AMSVGQEDDDEVIAAINTTPLVDVMLVLLIIFLITIPVVTHTIPLQLPKEAVQPLQTTPKSIELAVNREGQYFWGEQLVD
GPTLLAKLKAVSQMVPQPDVHVRGDQDTRYEFIGRLITDCERAGIAKVSFITEPPARGG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=140, Percent_Identity=30, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15361; Mature: 15230

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMSVGQEDDDEVIAAINTTPLVDVMLVLLIIFLITIPVVTHTIPLQLPKEAVQPLQTTP
CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
KSIELAVNREGQYFWGEQLVDGPTLLAKLKAVSQMVPQPDVHVRGDQDTRYEFIGRLITD
CCEEEEECCCCCEECCCHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMSVGQEDDDEVIAAINTTPLVDVMLVLLIIFLITIPVVTHTIPLQLPKEAVQPLQTTP
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
KSIELAVNREGQYFWGEQLVDGPTLLAKLKAVSQMVPQPDVHVRGDQDTRYEFIGRLITD
CCEEEEECCCCCEECCCHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
CERAGIAKVSFITEPPARGG
HHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]