BacMap

Definition	Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession	NC_012721
Length	2,827,333

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The map label for this gene is ykvO [H]

Identifier: 238025414

GI number: 238025414

Start: 2603078

End: 2603842

Strand: Direct

Name: ykvO [H]

Synonym: bglu_2g21030

Alternate gene names: 238025414

Gene position: 2603078-2603842 (Clockwise)

Preceding gene: 238025407

Following gene: 238025427

Centisome position: 92.07

GC content: 70.46

Gene sequence:

>765_bases
ATGGCACGCAAGCTCGACAACAAGATCGCACTCGTCACCGGCGCCACCAGCGGCATCGGCCTCGCCACCGCGCAGCGCTT
CGCCGCCGAAGGCGCGCAGGTCTACCTGACCGGCCGCCGTGAGGCCGAACTCGAGGCGGCGGTCGCCTCGATCCGCGCGG
CCGGCGGCACGGCCACCGGCCTGCGCGTGGACTCCACCCGGCTCGACCAACTCGATGCGCTGTATGCGCGGATCCGCGAG
GAACAGGGCCGCCTCGACGTGCTGTTCGCCAACGCCGGCGGCGGCTCGATGCTGCCGCTCGGCGAGATCACCGAGGCGCA
TTTCGACGACACCTTCGATCGCAACGTGAAGGCCGTGCTGTTTACGGTGCAGAAGGCGCTGCCGCTGCTGGCCGACGGCG
CGTCGGTGATCCTCACGGGCTCGACGGCCGGCAGCTCGGGCACCGCGGCGTTCAGCGTCTATTCGGCCTCGAAGGCGGCG
GTGCGCGCGTTCGCCCGCAGTTGGATTCTCGACCTGAAGCCGCGACGCATCCGCGTCAACACCCTCAGCCCGGGCTCGAC
GCGCACGCCCGGCCTGCTCGACCTGGCCGGCCAGGACGAAGCGCAGCGGCAGGAGCTGGCCGATTATCTGGCCGCGCAGA
TTCCGCTGGAGCGCCTGGGCGAGCCGGAGGAAATCGCCAGCGCCGCGCTGTTCCTGGCCTCGGACGATGCGAGCTTCGTG
AACGGTGCGGAACTGTTCGTCGATGGCGGCCAGCAGCAGATCTGA

Upstream 100 bases:

>100_bases
GTCGATATTCTCCCTACATCGCAGCAGCACACGGCACGCCGCGCCCAACGCGAACCGCGGCGTCGCCCCGACCGAACGGA
TCGAAACCAGGAGAATCATC

Downstream 100 bases:

>100_bases
GCGCGGAGCCGGGCGGCGCGGCGGTGAGGAGCGAACCGGACATCGCCTGGATCGCGCGTGACGATACGAACCTGCTGATG
GTGGAGTTGCTGGCGTCCGG

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MARKLDNKIALVTGATSGIGLATAQRFAAEGAQVYLTGRREAELEAAVASIRAAGGTATGLRVDSTRLDQLDALYARIRE
EQGRLDVLFANAGGGSMLPLGEITEAHFDDTFDRNVKAVLFTVQKALPLLADGASVILTGSTAGSSGTAAFSVYSASKAA
VRAFARSWILDLKPRRIRVNTLSPGSTRTPGLLDLAGQDEAQRQELADYLAAQIPLERLGEPEEIASAALFLASDDASFV
NGAELFVDGGQQQI

Sequences:

>Translated_254_residues
MARKLDNKIALVTGATSGIGLATAQRFAAEGAQVYLTGRREAELEAAVASIRAAGGTATGLRVDSTRLDQLDALYARIRE
EQGRLDVLFANAGGGSMLPLGEITEAHFDDTFDRNVKAVLFTVQKALPLLADGASVILTGSTAGSSGTAAFSVYSASKAA
VRAFARSWILDLKPRRIRVNTLSPGSTRTPGLLDLAGQDEAQRQELADYLAAQIPLERLGEPEEIASAALFLASDDASFV
NGAELFVDGGQQQI
>Mature_253_residues
ARKLDNKIALVTGATSGIGLATAQRFAAEGAQVYLTGRREAELEAAVASIRAAGGTATGLRVDSTRLDQLDALYARIREE
QGRLDVLFANAGGGSMLPLGEITEAHFDDTFDRNVKAVLFTVQKALPLLADGASVILTGSTAGSSGTAAFSVYSASKAAV
RAFARSWILDLKPRRIRVNTLSPGSTRTPGLLDLAGQDEAQRQELADYLAAQIPLERLGEPEEIASAALFLASDDASFVN
GAELFVDGGQQQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=33.7254901960784, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=32.6612903225806, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI126723750, Length=258, Percent_Identity=31.7829457364341, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=34.2245989304813, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=32.9787234042553, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=33.201581027668, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=33.7254901960784, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=30.8641975308642, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=28.8, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI59889578, Length=192, Percent_Identity=35.4166666666667, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI15277342, Length=274, Percent_Identity=29.1970802919708, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=24.9027237354086, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI209862901, Length=223, Percent_Identity=27.8026905829596, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923983, Length=223, Percent_Identity=27.8026905829596, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31542939, Length=253, Percent_Identity=28.8537549407115, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI223718074, Length=240, Percent_Identity=30.4166666666667, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4758504, Length=267, Percent_Identity=27.7153558052434, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4503301, Length=230, Percent_Identity=27.3913043478261, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=253, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=31.0756972111554, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=34.9206349206349, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=31.8548387096774, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=32.6771653543307, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=32.4110671936759, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=30.1587301587302, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=31.4516129032258, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=32.6612903225806, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787526, Length=242, Percent_Identity=32.2314049586777, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=29.4820717131474, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=27.1255060728745, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=28.6290322580645, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=31.1111111111111, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=26.2745098039216, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786701, Length=189, Percent_Identity=29.1005291005291, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=33.4630350194552, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=33.587786259542, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=34.8314606741573, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=32.5301204819277, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=32.9501915708812, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=31.9230769230769, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=29.4573643410853, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=31.9391634980989, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=32.5757575757576, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=32.319391634981, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=32.5842696629214, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=31.9391634980989, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=33.4615384615385, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=31.8725099601594, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.203007518797, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.8973384030418, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=32.319391634981, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=31.8181818181818, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.1969696969697, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=29.8850574712644, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=31.640625, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=30.2325581395349, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=30.0380228136882, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=32.03125, Blast_Score=90, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=29.4573643410853, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=258, Percent_Identity=32.1705426356589, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=30.5343511450382, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=29.1666666666667, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=28.6274509803922, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997099, Length=242, Percent_Identity=26.4462809917355, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=198, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=217, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=182, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=175, Percent_Identity=30.8571428571429, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=217, Percent_Identity=30.8755760368664, Blast_Score=76, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=35.9375, Blast_Score=133, Evalue=9e-32,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=32.5490196078431, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=36.2204724409449, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=33.201581027668, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=33.4645669291339, Blast_Score=111, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32, Blast_Score=110, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36.4, Blast_Score=108, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=32.421875, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24640492, Length=234, Percent_Identity=27.3504273504274, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=30.9160305343511, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221510726, Length=197, Percent_Identity=27.9187817258883, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26695; Mature: 26564

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKLDNKIALVTGATSGIGLATAQRFAAEGAQVYLTGRREAELEAAVASIRAAGGTATG
CCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
LRVDSTRLDQLDALYARIREEQGRLDVLFANAGGGSMLPLGEITEAHFDDTFDRNVKAVL
EEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHH
FTVQKALPLLADGASVILTGSTAGSSGTAAFSVYSASKAAVRAFARSWILDLKPRRIRVN
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEE
TLSPGSTRTPGLLDLAGQDEAQRQELADYLAAQIPLERLGEPEEIASAALFLASDDASFV
EECCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHEEEEEECCCCCCC
NGAELFVDGGQQQI
CCEEEEEECCCCCC
>Mature Secondary Structure 
ARKLDNKIALVTGATSGIGLATAQRFAAEGAQVYLTGRREAELEAAVASIRAAGGTATG
CCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
LRVDSTRLDQLDALYARIREEQGRLDVLFANAGGGSMLPLGEITEAHFDDTFDRNVKAVL
EEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHH
FTVQKALPLLADGASVILTGSTAGSSGTAAFSVYSASKAAVRAFARSWILDLKPRRIRVN
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEE
TLSPGSTRTPGLLDLAGQDEAQRQELADYLAAQIPLERLGEPEEIASAALFLASDDASFV
EECCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHEEEEEECCCCCCC
NGAELFVDGGQQQI
CCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]