| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238025366
Identifier: 238025366
GI number: 238025366
Start: 2528765
End: 2530474
Strand: Direct
Name: 238025366
Synonym: bglu_2g20420
Alternate gene names: NA
Gene position: 2528765-2530474 (Clockwise)
Preceding gene: 238025364
Following gene: 238025371
Centisome position: 89.44
GC content: 74.21
Gene sequence:
>1710_bases ATGCCGCACCCGCCCTACCTGCCGTTCGCCCTCGGCCGCGGCCCGGCCCGGCAGGCCGAGCGGCGGATCGATCGCGCGCT GCGCCGTCCGTCCACCTATCCCCATCCGGCCGGCCGGATCGAGCGAATCGAGACCCATCTTTCGGTGGTTTACCTGGCCG GCCGGTATGCCTACAAGCGCCTCAAGCCGGTGCGCCTGCCCTTCGTCGATCTGGCCCGCGCAGCACAGCGGCGTCGCTGC GCGCTGGCCGGATACCGGCTCAACCAGCGTCTGGCCGGCCCGCTGTATCTCGGCGTCTGGACGCTCCTGGCACGCGGCCG CCGCTGCGCATTCGGCCGCTCGGCCCGCCCCGGCCGGCACCGGACGGCAAGCCCAGCGGGCGAATATGTGGTGCGCATGC GCCGCTTCGATGCCGACGCCCTGCTGTCGGCGCGCTGCGCCCACCAGGCCGAGGCGCCGGCGGACGCCCAGGCCCTGGCG ATCGCGCTGGCGCGGGACCATCGCCAGGCGCCGCGCTGCCGCGAGGGGGACGCCGCCCGGGCGGCCGCGCAGTGCCGGTC CCTGCTCGACGAACCGGACGCGACGGTGCCGGACGAAGCCGCGCTGCGGGCCTGGTACGCGGGCGAGCTGGATCGCATCG AGGCCGCATTGCTGCGTCGTCACGCCGAGGGTTTCGTGCGCGTCTGCCACGGCGACCTGCATCTGGACAACATCGTCCGC TGGCGGCAGCGCGTCCTGATGTTCGACTGCATCGAATTCGACGAACGCCTGCGCCGGATCGACGTCGCGAGCGACCTCGC CTTCGCGTTGATGGACTACTGCGCGCACGGGCGGGGAGACTGCGCGCATCGCCTGCTGTCGGTCTGGCTCGCTGGCACCG GGGACTACGCGGCCCTGGCCGTGCTGCCCGGCTATTTCGTCTATCGCGCGCTGGTCTGCGCGCTCACCGCCCGCCTGCGC GGCGAGCACGCCGCGCGCGCACGCTACCTGCGCATCGCCGCGAGCATGGCGCAATCGCGGCGCGCCGCCCGGCCGCGCCT GCTGCTCTGCCACGGCTTTTCGGGCTCGGGAAAATCGGCGGCCAGCAGTGTGCTGGCCGGGATGCTCGGCGCGATCCGTC TATCCAGCGACGTCGAACGCAAGCGCATGGCGGGCGTGGCGCAAGCCGTGCGGCTGCCGCCCCCGGCCTATTCGGAGACC GCGATCGACGCCGTCTATCAGCGCCTGCTCGAGCAGGCGGCCAGCGTTCTCGCCAGCGCCCAGACGGCGATCGTCGATGC GAGCTTCCTGCGCCGGCGGCACCGCGCCGCCTTCCTGGCGCTGGCCGAGCGCCTCGGCGCCGAGGCCGCGATCCTCGACT TCGACGCCAGCCGGGAAACGCTCGCCGCGCGCCTGCGTGCCAGGGCAAGGCTGGCCCGCGACCCGTCGGACGCGGACACG GCGGTGCTGGCTCGACAATGCTTGCAAGCCGAGCCGCTCGAACCCGCCGAGGCGGCACTCGCGATCCGCTTCGATACCGG CTGCGATGCCGGCGCCTACCTCTGCCGCCGCTTCTGGCAGCCGCTGTTCGCGGCGCTGCCCATCAACGGCGCGGGCGACT CGCCGATCCGGGCCGGCGCAGCGGACCCGCCCGCCGAGCATGCGCACGGCGCCGGCACGAGGCGCTGCGCGGCTTGCGGG CCGCTCGGCGTGGCTGCCGCGCAGGCCTGA
Upstream 100 bases:
>100_bases CGCGCGGCGCGGGCGGGACGCGGGCGACTGCCGGCCCGCCCGTGGGACCGCCCTCGCCGCGAACCGCGCGCAGGCCGCGC GCCGCTCCGGGAGACCATGC
Downstream 100 bases:
>100_bases GCGCCGCGACGCCGCGCCCCTGCCCGGTCCCGGAATCGCCACGATGCGCCCGCCATGCGCATCGCGCTGTTCCTCGCCAG GATCGCCTGCTCGCCGAGCA
Product: aminoglycoside phosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MPHPPYLPFALGRGPARQAERRIDRALRRPSTYPHPAGRIERIETHLSVVYLAGRYAYKRLKPVRLPFVDLARAAQRRRC ALAGYRLNQRLAGPLYLGVWTLLARGRRCAFGRSARPGRHRTASPAGEYVVRMRRFDADALLSARCAHQAEAPADAQALA IALARDHRQAPRCREGDAARAAAQCRSLLDEPDATVPDEAALRAWYAGELDRIEAALLRRHAEGFVRVCHGDLHLDNIVR WRQRVLMFDCIEFDERLRRIDVASDLAFALMDYCAHGRGDCAHRLLSVWLAGTGDYAALAVLPGYFVYRALVCALTARLR GEHAARARYLRIAASMAQSRRAARPRLLLCHGFSGSGKSAASSVLAGMLGAIRLSSDVERKRMAGVAQAVRLPPPAYSET AIDAVYQRLLEQAASVLASAQTAIVDASFLRRRHRAAFLALAERLGAEAAILDFDASRETLAARLRARARLARDPSDADT AVLARQCLQAEPLEPAEAALAIRFDTGCDAGAYLCRRFWQPLFAALPINGAGDSPIRAGAADPPAEHAHGAGTRRCAACG PLGVAAAQA
Sequences:
>Translated_569_residues MPHPPYLPFALGRGPARQAERRIDRALRRPSTYPHPAGRIERIETHLSVVYLAGRYAYKRLKPVRLPFVDLARAAQRRRC ALAGYRLNQRLAGPLYLGVWTLLARGRRCAFGRSARPGRHRTASPAGEYVVRMRRFDADALLSARCAHQAEAPADAQALA IALARDHRQAPRCREGDAARAAAQCRSLLDEPDATVPDEAALRAWYAGELDRIEAALLRRHAEGFVRVCHGDLHLDNIVR WRQRVLMFDCIEFDERLRRIDVASDLAFALMDYCAHGRGDCAHRLLSVWLAGTGDYAALAVLPGYFVYRALVCALTARLR GEHAARARYLRIAASMAQSRRAARPRLLLCHGFSGSGKSAASSVLAGMLGAIRLSSDVERKRMAGVAQAVRLPPPAYSET AIDAVYQRLLEQAASVLASAQTAIVDASFLRRRHRAAFLALAERLGAEAAILDFDASRETLAARLRARARLARDPSDADT AVLARQCLQAEPLEPAEAALAIRFDTGCDAGAYLCRRFWQPLFAALPINGAGDSPIRAGAADPPAEHAHGAGTRRCAACG PLGVAAAQA >Mature_568_residues PHPPYLPFALGRGPARQAERRIDRALRRPSTYPHPAGRIERIETHLSVVYLAGRYAYKRLKPVRLPFVDLARAAQRRRCA LAGYRLNQRLAGPLYLGVWTLLARGRRCAFGRSARPGRHRTASPAGEYVVRMRRFDADALLSARCAHQAEAPADAQALAI ALARDHRQAPRCREGDAARAAAQCRSLLDEPDATVPDEAALRAWYAGELDRIEAALLRRHAEGFVRVCHGDLHLDNIVRW RQRVLMFDCIEFDERLRRIDVASDLAFALMDYCAHGRGDCAHRLLSVWLAGTGDYAALAVLPGYFVYRALVCALTARLRG EHAARARYLRIAASMAQSRRAARPRLLLCHGFSGSGKSAASSVLAGMLGAIRLSSDVERKRMAGVAQAVRLPPPAYSETA IDAVYQRLLEQAASVLASAQTAIVDASFLRRRHRAAFLALAERLGAEAAILDFDASRETLAARLRARARLARDPSDADTA VLARQCLQAEPLEPAEAALAIRFDTGCDAGAYLCRRFWQPLFAALPINGAGDSPIRAGAADPPAEHAHGAGTRRCAACGP LGVAAAQA
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 62077; Mature: 61946
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHPPYLPFALGRGPARQAERRIDRALRRPSTYPHPAGRIERIETHLSVVYLAGRYAYKR CCCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LKPVRLPFVDLARAAQRRRCALAGYRLNQRLAGPLYLGVWTLLARGRRCAFGRSARPGRH CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC RTASPAGEYVVRMRRFDADALLSARCAHQAEAPADAQALAIALARDHRQAPRCREGDAAR CCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH AAAQCRSLLDEPDATVPDEAALRAWYAGELDRIEAALLRRHAEGFVRVCHGDLHLDNIVR HHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH WRQRVLMFDCIEFDERLRRIDVASDLAFALMDYCAHGRGDCAHRLLSVWLAGTGDYAALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH VLPGYFVYRALVCALTARLRGEHAARARYLRIAASMAQSRRAARPRLLLCHGFSGSGKSA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH ASSVLAGMLGAIRLSSDVERKRMAGVAQAVRLPPPAYSETAIDAVYQRLLEQAASVLASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QTAIVDASFLRRRHRAAFLALAERLGAEAAILDFDASRETLAARLRARARLARDPSDADT HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHH AVLARQCLQAEPLEPAEAALAIRFDTGCDAGAYLCRRFWQPLFAALPINGAGDSPIRAGA HHHHHHHHCCCCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ADPPAEHAHGAGTRRCAACGPLGVAAAQA CCCCHHHCCCCCCCCHHCCCCCCHHHCCC >Mature Secondary Structure PHPPYLPFALGRGPARQAERRIDRALRRPSTYPHPAGRIERIETHLSVVYLAGRYAYKR CCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LKPVRLPFVDLARAAQRRRCALAGYRLNQRLAGPLYLGVWTLLARGRRCAFGRSARPGRH CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC RTASPAGEYVVRMRRFDADALLSARCAHQAEAPADAQALAIALARDHRQAPRCREGDAAR CCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH AAAQCRSLLDEPDATVPDEAALRAWYAGELDRIEAALLRRHAEGFVRVCHGDLHLDNIVR HHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH WRQRVLMFDCIEFDERLRRIDVASDLAFALMDYCAHGRGDCAHRLLSVWLAGTGDYAALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH VLPGYFVYRALVCALTARLRGEHAARARYLRIAASMAQSRRAARPRLLLCHGFSGSGKSA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH ASSVLAGMLGAIRLSSDVERKRMAGVAQAVRLPPPAYSETAIDAVYQRLLEQAASVLASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH QTAIVDASFLRRRHRAAFLALAERLGAEAAILDFDASRETLAARLRARARLARDPSDADT HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHH AVLARQCLQAEPLEPAEAALAIRFDTGCDAGAYLCRRFWQPLFAALPINGAGDSPIRAGA HHHHHHHHCCCCCCCCHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC ADPPAEHAHGAGTRRCAACGPLGVAAAQA CCCCHHHCCCCCCCCHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]