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The map label for this gene is cspA [H]

Identifier: 238025342

GI number: 238025342

Start: 2507605

End: 2507808

Strand: Direct

Name: cspA [H]

Synonym: bglu_2g20180

Alternate gene names: 238025342

Gene position: 2507605-2507808 (Clockwise)

Preceding gene: 238025340

Following gene: 238025343

Centisome position: 88.69

GC content: 57.84

Gene sequence:

>204_bases
ATGTATACCGGCACGGTCAAGTGGTTCAACGACGCGAAAGGCTTTGGGTTCATCACGCCCGACGACGGAAGCGAGGACGT
GTTTGTCCATTTTTCCGAAATCCAGGTGAGCGGCTTCAAATCGCTGCAGGACAGCCAACGTGTGCGATACGAGGTGCGTA
CCGGCCCGAAGGGCAAACAGGCGGCCGACGTGCAGCCGATTTGA

Upstream 100 bases:

>100_bases
CCGACGGCGGGACAATTATTCGGTCTTGATTCAAGTCAGTTGCGCAAGCGCGTCCGCAAGCGAGCATGGGCTCGTCCCTT
CCCGACTCGACGAGGCAGCG

Downstream 100 bases:

>100_bases
GCAGGCCCGCCCCCTTGGTGAGCCCGGGTAAGGGCTTGGCGCAGCCGGCGATTGACCTGAGTCAATCGCGGAGCGCCGCC
GCCTCCTAGACTGGGCCGCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MYTGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPKGKQAADVQPI

Sequences:

>Translated_67_residues
MYTGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPKGKQAADVQPI
>Mature_67_residues
MYTGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPKGKQAADVQPI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=92, Evalue=9e-21,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=52.2388059701493, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=60, Blast_Score=85, Evalue=7e-19,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=60.9375, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=58.0645161290323, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=56.4516129032258, Blast_Score=77, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983225, Length=65, Percent_Identity=44.6153846153846, Blast_Score=61, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7514; Mature: 7514

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPKGKQ
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC
AADVQPI
CCCCCCC
>Mature Secondary Structure
MYTGTVKWFNDAKGFGFITPDDGSEDVFVHFSEIQVSGFKSLQDSQRVRYEVRTGPKGKQ
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC
AADVQPI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA