| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ycbX [H]
Identifier: 238025131
GI number: 238025131
Start: 2244845
End: 2245714
Strand: Direct
Name: ycbX [H]
Synonym: bglu_2g17960
Alternate gene names: 238025131
Gene position: 2244845-2245714 (Clockwise)
Preceding gene: 238025118
Following gene: 238025132
Centisome position: 79.4
GC content: 70.34
Gene sequence:
>870_bases ATGCCGATCCTCAGTGAACTGTTCCTCTATCCGATCAAGTCCTGTGCCGGCATATCGGTCACGCGCGCGCGGCTGCTGGA AAGCGGCCTGGAACACGACCGCGGCTGGATGGTGGCGGAGCCGTCCGGCGCGATGGTCACGCAGCGCGAGCACGCCAGGC TCGCGCTGGTGCGCGTCGCGATCGGCGAAACCGAGCTGCTGGTCGACGCGCCCGGCATGCCCACACTGTGCACACCGCTC GACCCACGCGCCCACCAGGGCGCGCCGACGCTGCGCGTCACGGTCTGGGGCAGCAGCTTCGACGCGCTCGACACCGGCGC GGCCACGGCGCAGTGGTTCAGCGACTATCTGGGCATCACGGTGCGGCTGATGCGCTTCTCGCCAGAGGTGCGTCGCGAGG TGAGCCGCGAGTGGACCGGCCGGCTCAGCACCCACACTCAGTTCGCCGACGGCTTCCCGGTGATGGTGGTCGGCCAGTCC TCGCTCGACGATCTGAACGCGCGGCTCGCACGGCGCGGCGTGCCGGCGGTGGGCATGGACCGCTTCCGCCCGAACCTGGT GATCGCGGGGCTCGCGGCCTACGAGGAGGATTTCGTCGAGCAGCTGGACGTGCAGACCGCCTCGGGTCCGATCCGGCTCA GGCTCGTCAAGCTCTGCACGCGCTGCCCGATCCCCGACATCGACCAGACGCTCGGCGGCCCGCATCCGCAGTGGCCGCAC GAGCCGCTCGACACACTGAGCACCTATCGCGCGAGCGCACGCTTCGGCGGCGCGCTGACGTTCGGCAAGCATGCGGTGCT CGCGAGCGCCGGAGCCGGCGTACTCGAAACCGGCCTGCCGCTCGAGGCCGAGATCGGCTTCGACGATTGA
Upstream 100 bases:
>100_bases CCACGGCGAAACGGTAGCTCGATACCACCGCCCCCTCCGGATCATCGATCTGGCAGAATCCGGATTCCCCGCACCTCGCG CGCCCCGCACGCCCACCGTC
Downstream 100 bases:
>100_bases GCCCGCGCGCGGCGCTTCCCACCATCTGACATTGTCAGTAATCCTCTTTTTCCGGCTGCGCCGGCCGGATGCGCCGGCTC GCGCGGCGGCGCCACCAGGG
Product: MOSC domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MPILSELFLYPIKSCAGISVTRARLLESGLEHDRGWMVAEPSGAMVTQREHARLALVRVAIGETELLVDAPGMPTLCTPL DPRAHQGAPTLRVTVWGSSFDALDTGAATAQWFSDYLGITVRLMRFSPEVRREVSREWTGRLSTHTQFADGFPVMVVGQS SLDDLNARLARRGVPAVGMDRFRPNLVIAGLAAYEEDFVEQLDVQTASGPIRLRLVKLCTRCPIPDIDQTLGGPHPQWPH EPLDTLSTYRASARFGGALTFGKHAVLASAGAGVLETGLPLEAEIGFDD
Sequences:
>Translated_289_residues MPILSELFLYPIKSCAGISVTRARLLESGLEHDRGWMVAEPSGAMVTQREHARLALVRVAIGETELLVDAPGMPTLCTPL DPRAHQGAPTLRVTVWGSSFDALDTGAATAQWFSDYLGITVRLMRFSPEVRREVSREWTGRLSTHTQFADGFPVMVVGQS SLDDLNARLARRGVPAVGMDRFRPNLVIAGLAAYEEDFVEQLDVQTASGPIRLRLVKLCTRCPIPDIDQTLGGPHPQWPH EPLDTLSTYRASARFGGALTFGKHAVLASAGAGVLETGLPLEAEIGFDD >Mature_288_residues PILSELFLYPIKSCAGISVTRARLLESGLEHDRGWMVAEPSGAMVTQREHARLALVRVAIGETELLVDAPGMPTLCTPLD PRAHQGAPTLRVTVWGSSFDALDTGAATAQWFSDYLGITVRLMRFSPEVRREVSREWTGRLSTHTQFADGFPVMVVGQSS LDDLNARLARRGVPAVGMDRFRPNLVIAGLAAYEEDFVEQLDVQTASGPIRLRLVKLCTRCPIPDIDQTLGGPHPQWPHE PLDTLSTYRASARFGGALTFGKHAVLASAGAGVLETGLPLEAEIGFDD
Specific function: Unknown
COG id: COG3217
COG function: function code R; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MOSC domain [H]
Homologues:
Organism=Homo sapiens, GI31542713, Length=254, Percent_Identity=31.496062992126, Blast_Score=128, Evalue=7e-30, Organism=Homo sapiens, GI224600454, Length=280, Percent_Identity=31.7857142857143, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI157388923, Length=245, Percent_Identity=25.3061224489796, Blast_Score=96, Evalue=4e-20, Organism=Escherichia coli, GI1787179, Length=282, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17540702, Length=287, Percent_Identity=28.2229965156794, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17561286, Length=263, Percent_Identity=26.9961977186312, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI71990971, Length=264, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI17647607, Length=266, Percent_Identity=28.9473684210526, Blast_Score=86, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR012675 - InterPro: IPR001041 - InterPro: IPR005302 - InterPro: IPR005303 - InterPro: IPR011037 [H]
Pfam domain/function: PF00111 Fer2; PF03473 MOSC; PF03476 MOSC_N [H]
EC number: NA
Molecular weight: Translated: 31398; Mature: 31267
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPILSELFLYPIKSCAGISVTRARLLESGLEHDRGWMVAEPSGAMVTQREHARLALVRVA CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEECHHHHEEEEEEEE IGETELLVDAPGMPTLCTPLDPRAHQGAPTLRVTVWGSSFDALDTGAATAQWFSDYLGIT ECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH VRLMRFSPEVRREVSREWTGRLSTHTQFADGFPVMVVGQSSLDDLNARLARRGVPAVGMD HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHH RFRPNLVIAGLAAYEEDFVEQLDVQTASGPIRLRLVKLCTRCPIPDIDQTLGGPHPQWPH HCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC EPLDTLSTYRASARFGGALTFGKHAVLASAGAGVLETGLPLEAEIGFDD CHHHHHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHCCCCCEECCCCCC >Mature Secondary Structure PILSELFLYPIKSCAGISVTRARLLESGLEHDRGWMVAEPSGAMVTQREHARLALVRVA CHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEECHHHHEEEEEEEE IGETELLVDAPGMPTLCTPLDPRAHQGAPTLRVTVWGSSFDALDTGAATAQWFSDYLGIT ECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH VRLMRFSPEVRREVSREWTGRLSTHTQFADGFPVMVVGQSSLDDLNARLARRGVPAVGMD HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCHH RFRPNLVIAGLAAYEEDFVEQLDVQTASGPIRLRLVKLCTRCPIPDIDQTLGGPHPQWPH HCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC EPLDTLSTYRASARFGGALTFGKHAVLASAGAGVLETGLPLEAEIGFDD CHHHHHHHHHHHHHCCCEEECCCHHHHHHCCCCHHHCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]