Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

Click here to switch to the map view.

The map label for this gene is 238024802

Identifier: 238024802

GI number: 238024802

Start: 1839926

End: 1841413

Strand: Reverse

Name: 238024802

Synonym: bglu_2g14400

Alternate gene names: NA

Gene position: 1841413-1839926 (Counterclockwise)

Preceding gene: 238024804

Following gene: 238024801

Centisome position: 65.13

GC content: 71.51

Gene sequence:

>1488_bases
ATGAACGTCAACGATTCCTCGTGTTCGTCTTCGTCCCAGGCCGCCGCGCGCCTCGATCCGATTGTCGCGATGCCGGCCCA
CGCGCTGTCGGCCGCGATTCGCAGCAGGGCCGTGTCGTGCGTCGAGACGATGCGCGCCTATCTCGACCGGATCGAACAGG
TGAATGGCCGCGTGAACGCGATCGTCGCGCTGCGCGAGCGCGCCGTGCTGCTCGCCGAGGCCGCGCGGAAGGACGCGGCG
CTCGCGCGCGGCGAATGGCAGGGCTGGCTGCACGGCATGCCGCAGGCGCCCAAGGATCTCGCGATGACGAAGGACATCGT
CACCACCCTGGGCTCGCCGATCTTCCGTGATTTCCGTCCCGCCGAGGACACGCTCGGCGTCGCGCGGATGCGCGCGGCCG
GCGCGATCTTCGTCGGCAAGACCAATACGCCCGAGTTCGGGCTCGGCTCGCACACGTTCAACGCGGTGTACGGCGCGACG
CGCAATCCCTACGACCTGGCGAAGAGCGCCGGCGGCAGCAGCGGCGGCGCGGCCGCTGCGCTGGCCGCGCGCATGCTGCC
GGTGGCCGACGGCAGCGACTTCGGCGGCTCGCTGCGCAATCCCGCCGCGTTCTGCAACGTGTTCGGCTTGCGCCCGTCGG
CCGGGCGCGTGCCGCGCTGGCCGGTGCCGGACGTGTTCTACCAGCAGTTCGGCGTGGAGGGGCCGATGGGGCGCACGGTC
GCCGATGTCGCGCAGTTGCTCGCGATCCAGGCCGGCCACGATCCGCGCGATCCGCTCTCGTTCGACGACGATCCGGCCCG
CTTCACGCAGCCGCTCGACGCGGACCCGCGCGGCAAGCGCATCGCATGGGTCGGCGACTGGCGCGGCCATCTGGCCATCG
AGCCCGGCGTGCTCGCGCTCGGCGAGCGGGCGCTCGACACGCTGCGCACGCTTGGTTGCGAGGTCGATGCGGCCTTGCCC
GACTTCGAGCCGGCGCGGATCTGGCAAATCTGGCTCGCGCATCGCCACCTGATGTCGGGCGGCAGCCTGCTCGCGCTCTA
TCGCGACCCGGCGCGGCGCGCGCTGCTCAAGCCGGAGGCCGTGTTCGAGGTCGAGGGGCTGCTGGCGATGACGGCCGATC
AGGTATACGAAGCGAGCGTCGCGCGTAGCGCGTGGTATCAGGCCGCGCTGGCGATGTTCGAGCGCTACGATTTCCTCGCC
GCGCCCACGGCGCAGGTGTTTCCGTTCGATGTCGAGGCGCGTTGGCCGGCCTCGATCGCGGGCCGCGCGATGGACAGCTA
CCACCGCTGGATGGAAACCGTCACGCCGTGGACGCTGGCCGGCTTGCCGGTGATCAACGTCCCGGCCGGCTTCAACGAGG
CGGGACTGCCGACCGGCATCCAGCTGATCGGCCGGCCGCGCGACGATTTCGGCCTGCTGCAGCTCGCGCATGCGTACCAG
CAGGCGAGCGACTGGGTGGCCGGGCGGCCGCCCGTGATCGGGGGCTGA

Upstream 100 bases:

>100_bases
GCATTTTTGCAGGAAACCCGTTTCTATAATCGCCCATGCGACGTCGGGGATGGCCTTGGCCCGACGCCCGTCTCCTCTCT
ATCCATTTCCGGAATTTCGC

Downstream 100 bases:

>100_bases
GCGCACGGCGGGCGGGAGCGCGGTGTTGCCGCGATGCCTGGCTCTGCCACCTTGCAAAACCTGGCCGGCCGCCGATACGT
TTCGAGATGTATCGACAGTT

Product: amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA
LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT
RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV
ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP
DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA
APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ
QASDWVAGRPPVIGG

Sequences:

>Translated_495_residues
MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA
LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT
RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV
ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP
DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA
APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ
QASDWVAGRPPVIGG
>Mature_495_residues
MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA
LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT
RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV
ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP
DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA
APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ
QASDWVAGRPPVIGG

Specific function: Unknown

COG id: COG0154

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amidase family [H]

Homologues:

Organism=Homo sapiens, GI195972892, Length=245, Percent_Identity=35.1020408163265, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI222831590, Length=250, Percent_Identity=34.4, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI166795287, Length=250, Percent_Identity=29.6, Blast_Score=74, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17537465, Length=252, Percent_Identity=31.3492063492063, Blast_Score=119, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17543272, Length=455, Percent_Identity=26.1538461538462, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17556264, Length=321, Percent_Identity=28.9719626168224, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17538252, Length=303, Percent_Identity=27.3927392739274, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71990152, Length=321, Percent_Identity=25.8566978193146, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17556276, Length=313, Percent_Identity=27.7955271565495, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17556278, Length=310, Percent_Identity=27.0967741935484, Blast_Score=82, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17538254, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319685, Length=411, Percent_Identity=28.9537712895377, Blast_Score=108, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6323950, Length=231, Percent_Identity=31.1688311688312, Blast_Score=87, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320448, Length=255, Percent_Identity=29.8039215686275, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI161078093, Length=520, Percent_Identity=26.3461538461538, Blast_Score=128, Evalue=7e-30,
Organism=Drosophila melanogaster, GI24648435, Length=506, Percent_Identity=26.4822134387352, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24648437, Length=506, Percent_Identity=26.4822134387352, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24644968, Length=533, Percent_Identity=24.765478424015, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24648113, Length=426, Percent_Identity=30.7511737089202, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI45550774, Length=507, Percent_Identity=26.4299802761341, Blast_Score=115, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24652985, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI19922090, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24652981, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24652983, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI21356731, Length=205, Percent_Identity=35.1219512195122, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24648441, Length=429, Percent_Identity=24.9417249417249, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648439, Length=429, Percent_Identity=24.9417249417249, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000120
- InterPro:   IPR020556 [H]

Pfam domain/function: PF01425 Amidase [H]

EC number: =3.5.1.4 [H]

Molecular weight: Translated: 53316; Mature: 53316

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00571 AMIDASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNA
CCCCCCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IVALRERAVLLAEAARKDAALARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRP
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCC
AEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGATRNPYDLAKSAGGSSGGAAAA
CHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCCHHHH
LAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLAL
HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCHHHH
GERALDTLRTLGCEVDAALPDFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHH
VFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLAAPTAQVFPFDVEARWPASIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH
GRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ
HHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHH
QASDWVAGRPPVIGG
HHHCCCCCCCCCCCC
>Mature Secondary Structure
MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNA
CCCCCCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IVALRERAVLLAEAARKDAALARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRP
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCC
AEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGATRNPYDLAKSAGGSSGGAAAA
CHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCCHHHH
LAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH
ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLAL
HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCHHHH
GERALDTLRTLGCEVDAALPDFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEA
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHH
VFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLAAPTAQVFPFDVEARWPASIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH
GRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ
HHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHH
QASDWVAGRPPVIGG
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]