Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

Click here to switch to the map view.

The map label for this gene is 238024493

Identifier: 238024493

GI number: 238024493

Start: 1395408

End: 1397222

Strand: Reverse

Name: 238024493

Synonym: bglu_2g10930

Alternate gene names: NA

Gene position: 1397222-1395408 (Counterclockwise)

Preceding gene: 238024494

Following gene: 238024492

Centisome position: 49.42

GC content: 64.24

Gene sequence:

>1815_bases
ATGGAAAACGACGACCCGATTCTGCGCTACTACGAGGCGGAAATGCGCTATTTGCGCGAGTCCGGCAGGGAGTTCGCGAA
AGCGCATCCCGATCGCGCGCGCCTGCTCAACCTCGATCGCGTGGGCGACCGCGATCCGTATGTCGAGCGGCTGTTCGAGG
GCTTTGCATTCCTGACCGGCCGGCTTCGACAGAAACTCGACGATGAACTGCCGGAGCTCACCGAGGGACTCGTGAGCCTC
CTATGGCCGCACTATCTGCGGATGATCCCGTCGCTGTCGGTGGTCCAGCTGATCCCGCTCGCGGACAAGCTGCAAAAAAC
CGAGATCGTGCCGGCAGGCGTGCCGGTTCGCTCCGCGCCGATTGCGATACCGCCGCCGGCCGGCGCCGATGGCTCGGTGC
CGAAGACGGTTCAGTGTCTATACCGAACCACGCAGGCCGTGACGCTGCAGCCGCTTTCGATCACGCATGCCGGCCCGAGT
GTGCGCCATGACGGCCGTTCGGTGATCCGGATCGGGTTCGCGCTCGACGGGTCGGCGCGCCGCAACGAAACGGACCTGAC
GCGACTGCGCGTGCATCTGAATGCGGATCTGCCGACTGCGTTCGCAATGCATCTCGCGCTTACGCGCCAGGTCGATGCAA
TCACCTGGCGCATTCCGGAAATCCGCGACGGCGAAGCGGTGCCGCTCTCCGGCGTCACGATCGAGCCGGCCGGTTTTTCG
ACCGAAGAACGGCTGTGGCCGAAGGCCGAGGCGGCTTTCTCGGGCTACCAGCTGCTGCTCGAGTATTTTACGTTCCGCGA
GAAATTCCTGTTCGTCGACCTACGCGGAGTCGACATCACGAAGCTGCCCGCGAGCGCGACCCGCTTCGAGCTGGAAATCG
TATTGAAGCAGGCCTATCCGTCGGACCAGCGCTTCAGCGCCGAGAACCTGCGCCTCTTCTGCAGCCCGGTGATCAATCTG
TTCGAACTGGATGCCGAACCGATCGTGATCGATCATCACGAAACCGAATATCGCGTGGTGCCGGCAGGTCATCAGGGCGG
GCATGTCGAAACCTACTCGGTCGACGCCATTGCGACATTCGACCATGACACGGCCGAGCGATACGAATACGTGCCGTTCG
CTACCTTCCGGCACCGCGGCGGCATGTTGCGGCACGAGGCGCCGGAGCGCTATTTCCATACGCGCGTGCGACCGGGTGTG
TCCGGGCTGCACGAAACCTGGGTGATTCTCGGCGGTCATGCCTGGGAGACCATGGACACGCTGCCCGAGGAAAGCCTGTC
GCTGCGTGTGACGGGCACGAACGGACTGTTGCCGCGCAAGGGGCTGCGTGAAGCCAGCCTCGACGAGCTGGCGGCCAGCC
CCCCGAACGTCGCGGGCGTACGCAACCTCGTGTCGCCGACCTTGCCGCTGTATCCGCCGACCGAAGACCGTTTCCAGTGG
CGCGTGTTATCGCATCTGGCGCCGAACTTCCTGTCGATGATGAATGCGGAAGTGCTGCGCGGTGCACTCGCACTGTACGA
CTGGACCGACGACGAGCTGAATCGCCGCCGGCTGGCCGGCATCCGGTGGGTCTCGCAGGAGCTCATCGAGGAGGTGACGG
GCGGCTCGGTCGAGCGTGGCGTGCTGATCGAGGTGACGCTCGATTCGCATGCGTTTTCGGGCGAGGGCGACGTGATGCTG
TTCGGCGAGCTGCTGCACCGGTTCTTCGCGCAGTACGCGGAAATCAACCTGTTCACCAAGCTGTCGATCGTGAGCCTGCC
GTCGCAGACCCGCACGATCTGGCCGCGCAGCAAAGCGCAGCGGGCTCCGCTATGA

Upstream 100 bases:

>100_bases
CGACAAGCCGGCGCTGGCCCGCCGCATCGGTGAACTGCAGGCGGAACTGACCGTGCTCGATCCGGCGCGTGCCCTGACTC
TCTCATAAGAACGAAGATCA

Downstream 100 bases:

>100_bases
GCGCGCGCGAACCGAAGGAAGTCTCCTTGGGGGACGAACTGCCGAATCTCGAGCCACTCGTCGCGTCGCTGCTCGCTCGC
GCGCCCCGCATGAATTTCAT

Product: type VI secretion protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Protein ImpG/VasA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL
LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS
VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL
FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV
SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML
FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL

Sequences:

>Translated_604_residues
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL
LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS
VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL
FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV
SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML
FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL
>Mature_604_residues
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL
LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS
VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL
FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV
SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML
FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL

Specific function: Unknown

COG id: COG3519

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68118; Mature: 68118

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHH
RLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCC
IAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPSVRHDGRSVIRIGFALDGSAR
EECCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCC
RNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCC
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYP
HHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCEEEEEEEEECCCC
SDQRFSAENLRLFCSPVINLFELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATF
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEC
DHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGVSGLHETWVILGGHAWETMDT
CCCHHHHEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHC
LPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERG
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VLIEVTLDSHAFSGEGDVMLFGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQ
EEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEECCCCCCC
RAPL
CCCC
>Mature Secondary Structure
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHH
RLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCC
IAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPSVRHDGRSVIRIGFALDGSAR
EECCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCC
RNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCC
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYP
HHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCEEEEEEEEECCCC
SDQRFSAENLRLFCSPVINLFELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATF
CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEC
DHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGVSGLHETWVILGGHAWETMDT
CCCHHHHEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHC
LPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERG
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VLIEVTLDSHAFSGEGDVMLFGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQ
EEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEECCCCCCC
RAPL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA