Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 238024405

GI number: 238024405

Start: 1269680

End: 1270288

Strand: Reverse

Name: pdtaR [H]

Synonym: bglu_2g09980

Alternate gene names: 238024405

Gene position: 1270288-1269680 (Counterclockwise)

Preceding gene: 238024406

Following gene: 238024404

Centisome position: 44.93

GC content: 71.1

Gene sequence:

>609_bases
ATGGGACTGACCGAACCCGCCCGCCCGCTGCGCGTGCTGCTCGTCACCGATACGGACAAGCCGATCGGCGAGCTGCGCGA
CACGCTCGCGCGGCTGCACTATGAAATGCTCGACGAAGTGGCCACGCCGGCGCGCCTGCCGGCCGTGGTCGAGAAGGAGC
GCCCCGACGTGGTGATCATCGATACCGAATCGCCGTCGCGCGACACGCTCGAACAGCTCGCGGTGATGCATGCGCGCGCG
CCGCGCCCGGTGCTGATGTTCAGCCCCGATGCCGACCAGCAGCTGATCCGCGCCGCGGTGGGCGCCGGGGTCAGCGCCTA
TCTCGTCGAGGGCCTGTCGGCCGAGCGGCTCGCGCCGATCCTCGAAGTCGCGCTGGCGCGCTTCTCGCACGACGCGGCGC
TGCGCCGGCGGCTCGCCGAGGTGGAGAGCGAGCTGGCCGACCGCAAGCTGATCGACCGCGCGAAACGGCTGCTGATGGAC
GCGCGCCGGCTATCGGAGCAGGATGCCTACGCGGCCCTGCGCCGCCGCGCCATGAACCAGGGCATCCGGATCGTCGAAGC
CGCGCGCCAGATCCTCGCCGCGTCCCGAATTCCCGATGGTGAAGCATGA

Upstream 100 bases:

>100_bases
CGCGCGCGCCGTTCCTCGCCCTGGCCCGGGCCGGCGGCCGCGCCGCGCCGCGCGCCCGGCCCGCGCGCGCCTCGTCATCG
CCTTGCGCCCCGCTCGCCCC

Downstream 100 bases:

>100_bases
ACACTCCGATCCTCCCGCCACCAGAACGCCGCGAACTGCGGCTCGGCTTCGTCGCGCTCAGCGACGCCGCGCCGCTCGTG
GTCGCCGAGCGCCTGCAGCT

Product: response regulator NasT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MGLTEPARPLRVLLVTDTDKPIGELRDTLARLHYEMLDEVATPARLPAVVEKERPDVVIIDTESPSRDTLEQLAVMHARA
PRPVLMFSPDADQQLIRAAVGAGVSAYLVEGLSAERLAPILEVALARFSHDAALRRRLAEVESELADRKLIDRAKRLLMD
ARRLSEQDAYAALRRRAMNQGIRIVEAARQILAASRIPDGEA

Sequences:

>Translated_202_residues
MGLTEPARPLRVLLVTDTDKPIGELRDTLARLHYEMLDEVATPARLPAVVEKERPDVVIIDTESPSRDTLEQLAVMHARA
PRPVLMFSPDADQQLIRAAVGAGVSAYLVEGLSAERLAPILEVALARFSHDAALRRRLAEVESELADRKLIDRAKRLLMD
ARRLSEQDAYAALRRRAMNQGIRIVEAARQILAASRIPDGEA
>Mature_201_residues
GLTEPARPLRVLLVTDTDKPIGELRDTLARLHYEMLDEVATPARLPAVVEKERPDVVIIDTESPSRDTLEQLAVMHARAP
RPVLMFSPDADQQLIRAAVGAGVSAYLVEGLSAERLAPILEVALARFSHDAALRRRLAEVESELADRKLIDRAKRLLMDA
RRLSEQDAYAALRRRAMNQGIRIVEAARQILAASRIPDGEA

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22383; Mature: 22252

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTEPARPLRVLLVTDTDKPIGELRDTLARLHYEMLDEVATPARLPAVVEKERPDVVII
CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCCCCEEEE
DTESPSRDTLEQLAVMHARAPRPVLMFSPDADQQLIRAAVGAGVSAYLVEGLSAERLAPI
ECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
LEVALARFSHDAALRRRLAEVESELADRKLIDRAKRLLMDARRLSEQDAYAALRRRAMNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIRIVEAARQILAASRIPDGEA
CHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GLTEPARPLRVLLVTDTDKPIGELRDTLARLHYEMLDEVATPARLPAVVEKERPDVVII
CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHCCCCCEEEE
DTESPSRDTLEQLAVMHARAPRPVLMFSPDADQQLIRAAVGAGVSAYLVEGLSAERLAPI
ECCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
LEVALARFSHDAALRRRLAEVESELADRKLIDRAKRLLMDARRLSEQDAYAALRRRAMNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIRIVEAARQILAASRIPDGEA
CHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]